四氢蝶啶衍生物作为多聚样激酶 1(PLK1)抑制剂的 QSAR 研究以及分子对接和动力学研究

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
ACS Applied Bio Materials Pub Date : 2023-02-01 Epub Date: 2023-02-06 DOI:10.1080/1062936X.2023.2167860
Garima, S Sharma, J Sindhu, P Kumar
{"title":"四氢蝶啶衍生物作为多聚样激酶 1(PLK1)抑制剂的 QSAR 研究以及分子对接和动力学研究","authors":"Garima, S Sharma, J Sindhu, P Kumar","doi":"10.1080/1062936X.2023.2167860","DOIUrl":null,"url":null,"abstract":"<p><p>PLK1 is the key target for dealing with different cancer because it plays an important role in cell proliferation. According to the regulation of OECD, a QSAR model was developed from a dataset of 68 tetrahydropteridin derivatives. Three descriptors (maxHaaCH, ATSC7i, AATS7m) were considered for the development of the QSAR model. The reliability and predictability of the developed QSAR model were evaluated by various statistical parameters (<i>r</i><sup>2</sup> = 0.8213, <i>r</i><sup>2</sup><sub>ext</sub> = 0.8771 and CCC<sub>ext</sub> = 0.9364). The maxHaaCH descriptor is positively correlated to pIC<sub>50</sub> whereas, the ATSC7i and AATS7m are negatively correlated with pIC<sub>50</sub>. The QSAR model explains all the structural features and shows a good correlation with the activity. Based on molecular modelling techniques, five compounds (D1-D5) were designed. Molecular docking and dynamics studies of the most active compound were performed with PDB ID: 2RKU. The results of the present investigation may be employed to identify and develop effective inhibitors for the treatment of PLK1-related pathophysiological disorders.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"QSAR study of tetrahydropteridin derivatives as polo-like kinase 1(PLK1) Inhibitors with molecular docking and dynamics study.\",\"authors\":\"Garima, S Sharma, J Sindhu, P Kumar\",\"doi\":\"10.1080/1062936X.2023.2167860\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>PLK1 is the key target for dealing with different cancer because it plays an important role in cell proliferation. According to the regulation of OECD, a QSAR model was developed from a dataset of 68 tetrahydropteridin derivatives. Three descriptors (maxHaaCH, ATSC7i, AATS7m) were considered for the development of the QSAR model. The reliability and predictability of the developed QSAR model were evaluated by various statistical parameters (<i>r</i><sup>2</sup> = 0.8213, <i>r</i><sup>2</sup><sub>ext</sub> = 0.8771 and CCC<sub>ext</sub> = 0.9364). The maxHaaCH descriptor is positively correlated to pIC<sub>50</sub> whereas, the ATSC7i and AATS7m are negatively correlated with pIC<sub>50</sub>. The QSAR model explains all the structural features and shows a good correlation with the activity. Based on molecular modelling techniques, five compounds (D1-D5) were designed. Molecular docking and dynamics studies of the most active compound were performed with PDB ID: 2RKU. The results of the present investigation may be employed to identify and develop effective inhibitors for the treatment of PLK1-related pathophysiological disorders.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2023-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.1080/1062936X.2023.2167860\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/2/6 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1080/1062936X.2023.2167860","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/2/6 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 2

摘要

PLK1 在细胞增殖过程中发挥着重要作用,因此是治疗各种癌症的关键靶点。根据经济合作与发展组织(OECD)的规定,我们从 68 种四氢蝶啶衍生物的数据集中建立了一个 QSAR 模型。建立 QSAR 模型时考虑了三个描述因子(maxHaaCH、ATSC7i、AATS7m)。通过各种统计参数(r2 = 0.8213、r2ext = 0.8771 和 CCCext = 0.9364)评估了所建立 QSAR 模型的可靠性和可预测性。maxHaaCH 描述因子与 pIC50 呈正相关,而 ATSC7i 和 AATS7m 与 pIC50 呈负相关。QSAR 模型解释了所有的结构特征,并显示出与活性的良好相关性。根据分子建模技术,设计了五个化合物(D1-D5)。对最具活性的化合物进行了分子对接和动力学研究,PDB ID:2RKU。本研究的结果可用于鉴定和开发治疗 PLK1 相关病理生理紊乱的有效抑制剂。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
QSAR study of tetrahydropteridin derivatives as polo-like kinase 1(PLK1) Inhibitors with molecular docking and dynamics study.

PLK1 is the key target for dealing with different cancer because it plays an important role in cell proliferation. According to the regulation of OECD, a QSAR model was developed from a dataset of 68 tetrahydropteridin derivatives. Three descriptors (maxHaaCH, ATSC7i, AATS7m) were considered for the development of the QSAR model. The reliability and predictability of the developed QSAR model were evaluated by various statistical parameters (r2 = 0.8213, r2ext = 0.8771 and CCCext = 0.9364). The maxHaaCH descriptor is positively correlated to pIC50 whereas, the ATSC7i and AATS7m are negatively correlated with pIC50. The QSAR model explains all the structural features and shows a good correlation with the activity. Based on molecular modelling techniques, five compounds (D1-D5) were designed. Molecular docking and dynamics studies of the most active compound were performed with PDB ID: 2RKU. The results of the present investigation may be employed to identify and develop effective inhibitors for the treatment of PLK1-related pathophysiological disorders.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信