Thuy Yen Duong, Linh Thi Khanh Pham, Xuyen Thi Kim Le, Ngoc Tran Thi Nguyen, Azizah Mohd Nor, Thanh Hoa Le
{"title":"鲶鱼的有丝系统发育及其对鲶鱼科和银尾亚目的分类意义。","authors":"Thuy Yen Duong, Linh Thi Khanh Pham, Xuyen Thi Kim Le, Ngoc Tran Thi Nguyen, Azizah Mohd Nor, Thanh Hoa Le","doi":"10.6620/ZS.2023.62-48","DOIUrl":null,"url":null,"abstract":"<p><p>Pangasiidae (catfish order: Siluriformes) comprises 30 valid catfish species in four genera: <i>Pangasius</i>, <i>Pangasianodon</i>, <i>Helicophagus</i>, and <i>Pseudolais</i>. Their systematics are frequently revised due to the addition of newly described species. Although Pangasiidae is known to be a monophyletic family, the generic and phylogenetic relationships among the taxa are poorly resolved. This study characterized three newly obtained complete mitogenomes of Mekong River catfishes from Vietnam (<i>Pangasius mekongensis</i>, <i>Pangasius krempfi</i>, and <i>Pangasianodon hypophthalmus</i>), as well as the inter-and intrafamilial relationships of the Pangasiidae and catfish families in Siluroidei. The genomic features of their mitogenomes were similar to those of previously reported pangasiids, including all regulatory elements, extended terminal associated sequences (ETAS), and conserved sequence blocks (CSBs) (CSB-1, CSB-2, CSB-3, and CSBs, A to F) in the control region. A comprehensive phylogeny constructed from datasets of multiple 13 PCG sequences from 117 complete mitogenomes of 32 recognized siluriform families established Pangasiidae as monophyletic and a sister group of Austroglanididae. The [Pangasiidae + Austroglanididae] + (Ictaluridae + Cranoglanididae) + Ariidae] clade is a sister to the \"Big Africa\" major clade of Siluriformes. Furthermore, both phylogenies constructed from the single barcodes (83 partial <i>cox</i>1 and 80 partial <i>cyt</i>B, respectively) clearly indicate genus relationships within Pangasiidae. <i>Pangasianodon</i> was monophyletic and a sister to the (<i>Pangasius</i> + <i>Helicophagus</i> + <i>Pseudolais</i>) group. Within the genus <i>Pangasius</i>, <i>P. mekongensis</i> was placed as a sister taxon to <i>P. pangasius</i>. <i>Pangasius sanitwongsei</i> was found to be related to and grouped with <i>Pangasianodon</i>, but in single-gene phylogenies, it was assigned to the <i>Pangasius + Helicophagus + Pseudolais</i> group<i>.</i> The datasets in this study are useful for studying pangasiid systematics, taxonomy and evolution.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641430/pdf/","citationCount":"0","resultStr":"{\"title\":\"Mitophylogeny of Pangasiid Catfishes and its Taxonomic Implications for Pangasiidae and the Suborder Siluroidei.\",\"authors\":\"Thuy Yen Duong, Linh Thi Khanh Pham, Xuyen Thi Kim Le, Ngoc Tran Thi Nguyen, Azizah Mohd Nor, Thanh Hoa Le\",\"doi\":\"10.6620/ZS.2023.62-48\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Pangasiidae (catfish order: Siluriformes) comprises 30 valid catfish species in four genera: <i>Pangasius</i>, <i>Pangasianodon</i>, <i>Helicophagus</i>, and <i>Pseudolais</i>. Their systematics are frequently revised due to the addition of newly described species. Although Pangasiidae is known to be a monophyletic family, the generic and phylogenetic relationships among the taxa are poorly resolved. This study characterized three newly obtained complete mitogenomes of Mekong River catfishes from Vietnam (<i>Pangasius mekongensis</i>, <i>Pangasius krempfi</i>, and <i>Pangasianodon hypophthalmus</i>), as well as the inter-and intrafamilial relationships of the Pangasiidae and catfish families in Siluroidei. The genomic features of their mitogenomes were similar to those of previously reported pangasiids, including all regulatory elements, extended terminal associated sequences (ETAS), and conserved sequence blocks (CSBs) (CSB-1, CSB-2, CSB-3, and CSBs, A to F) in the control region. A comprehensive phylogeny constructed from datasets of multiple 13 PCG sequences from 117 complete mitogenomes of 32 recognized siluriform families established Pangasiidae as monophyletic and a sister group of Austroglanididae. The [Pangasiidae + Austroglanididae] + (Ictaluridae + Cranoglanididae) + Ariidae] clade is a sister to the \\\"Big Africa\\\" major clade of Siluriformes. Furthermore, both phylogenies constructed from the single barcodes (83 partial <i>cox</i>1 and 80 partial <i>cyt</i>B, respectively) clearly indicate genus relationships within Pangasiidae. <i>Pangasianodon</i> was monophyletic and a sister to the (<i>Pangasius</i> + <i>Helicophagus</i> + <i>Pseudolais</i>) group. Within the genus <i>Pangasius</i>, <i>P. mekongensis</i> was placed as a sister taxon to <i>P. pangasius</i>. <i>Pangasius sanitwongsei</i> was found to be related to and grouped with <i>Pangasianodon</i>, but in single-gene phylogenies, it was assigned to the <i>Pangasius + Helicophagus + Pseudolais</i> group<i>.</i> The datasets in this study are useful for studying pangasiid systematics, taxonomy and evolution.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-09-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641430/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.6620/ZS.2023.62-48\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.6620/ZS.2023.62-48","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Mitophylogeny of Pangasiid Catfishes and its Taxonomic Implications for Pangasiidae and the Suborder Siluroidei.
Pangasiidae (catfish order: Siluriformes) comprises 30 valid catfish species in four genera: Pangasius, Pangasianodon, Helicophagus, and Pseudolais. Their systematics are frequently revised due to the addition of newly described species. Although Pangasiidae is known to be a monophyletic family, the generic and phylogenetic relationships among the taxa are poorly resolved. This study characterized three newly obtained complete mitogenomes of Mekong River catfishes from Vietnam (Pangasius mekongensis, Pangasius krempfi, and Pangasianodon hypophthalmus), as well as the inter-and intrafamilial relationships of the Pangasiidae and catfish families in Siluroidei. The genomic features of their mitogenomes were similar to those of previously reported pangasiids, including all regulatory elements, extended terminal associated sequences (ETAS), and conserved sequence blocks (CSBs) (CSB-1, CSB-2, CSB-3, and CSBs, A to F) in the control region. A comprehensive phylogeny constructed from datasets of multiple 13 PCG sequences from 117 complete mitogenomes of 32 recognized siluriform families established Pangasiidae as monophyletic and a sister group of Austroglanididae. The [Pangasiidae + Austroglanididae] + (Ictaluridae + Cranoglanididae) + Ariidae] clade is a sister to the "Big Africa" major clade of Siluriformes. Furthermore, both phylogenies constructed from the single barcodes (83 partial cox1 and 80 partial cytB, respectively) clearly indicate genus relationships within Pangasiidae. Pangasianodon was monophyletic and a sister to the (Pangasius + Helicophagus + Pseudolais) group. Within the genus Pangasius, P. mekongensis was placed as a sister taxon to P. pangasius. Pangasius sanitwongsei was found to be related to and grouped with Pangasianodon, but in single-gene phylogenies, it was assigned to the Pangasius + Helicophagus + Pseudolais group. The datasets in this study are useful for studying pangasiid systematics, taxonomy and evolution.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.