Zichao Zhang, Zhihui Wang, Yumeng Liu, Li Zhao, Weihua Fu
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Phosphorylation analysis was undertaken using the Clinical Proteomic Tumor Analysis Consortium (CP-TAC) and the PhosphoNET database. Genetic alterations of STIM1 were analyzed using cBioPortal. Prognostic analysis was via the R package \"survival\" function and the Kaplan-Meier plotter. Functional enrichment analysis was via by the R package \"cluster Profiler\" function. The association between STIM1 and tumor-infiltrating immune cells and immune markers was by the R package \"GSVA\" function and TIMER. STIM1 was differentially expressed and associated with distinct clinical stages in multiple tumors. The phosphorylation of STIM1 at S673 is highly expressed in clear cell renal carcinoma and lung adenocarcinoma tumors compared to normal tissues. STIM1 genetic alterations correlate with poor prognosis in several tumors, including ovarian cancer and lung squamous cell carcinomas. High STIM1 expression is associated with good or poor prognosis across diverse tumors. 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引用次数: 1
摘要
越来越多的证据表明基质相互作用分子1 (STIM1)是存储操作Ca2+进入(SOCE)的关键亚基,与肿瘤的生长、发展和转移密切相关。然而,没有关于STIM1在泛癌中的综合评估的报道。本研究旨在基于The Cancer Genome Atlas (TCGA)的泛癌数据,对人类肿瘤中STIM1的分子特征、功能机制、临床意义、免疫浸润相关性等进行一般性分析。基因表达分析采用TCGA RNA-seq数据,肿瘤免疫估计资源(TIMER)。磷酸化分析使用临床蛋白质组学肿瘤分析联盟(CP-TAC)和PhosphoNET数据库进行。使用cbiopportal分析STIM1的遗传改变。通过R包“生存”函数和Kaplan-Meier绘图仪进行预后分析。功能富集分析通过R包“cluster Profiler”功能进行。STIM1与肿瘤浸润性免疫细胞和免疫标记物的关联是通过R包“GSVA”功能和TIMER实现的。STIM1在多种肿瘤中差异表达并与不同临床分期相关。与正常组织相比,STIM1在S673位点的磷酸化在透明细胞肾癌和肺腺癌肿瘤中高度表达。STIM1基因改变与多种肿瘤的不良预后相关,包括卵巢癌和肺鳞状细胞癌。在多种肿瘤中,高STIM1表达与预后好坏相关。总生存期(OS)分析显示,STIM1是BRCA、KIRC、LIHC、LUAD、OV、SARC和UCEC患者的有利预后因素,是BLCA、KIRP、STAD和UVM患者的危险预后因素。在多种肿瘤中,STIM1的表达与免疫细胞浸润、免疫调节基因、趋化因子、免疫检查点密切相关。STIM1在不同肿瘤中的功能不同,发挥致癌或抗肿瘤作用。此外,它可以作为一种预后生物标志物和多种肿瘤的免疫治疗靶点。
Stromal Interaction Molecule 1 (STIM1) is a Potential Prognostic Biomarker and Correlates with Immune Infiltrates in Solid Tumors.
Increasing evidence has shown that stromal interaction molecule 1 (STIM1), a key subunit of store-operated Ca2+ entry (SOCE), is closely associated with tumor growth, development, and metastasis. However, there is no report of a comprehensive assessment of STIM1 in pan-cancer. This study aimed to perform a general analysis of STIM1 in human tumors, including its molecular characteristics, functional mechanisms, clinical significance, and immune infiltrates correlation based on pan-cancer data from The Cancer Genome Atlas (TCGA). Gene expression analysis was investigated using TCGA RNA-seq data, the Tumor Immune Estimation Resource (TIMER). Phosphorylation analysis was undertaken using the Clinical Proteomic Tumor Analysis Consortium (CP-TAC) and the PhosphoNET database. Genetic alterations of STIM1 were analyzed using cBioPortal. Prognostic analysis was via the R package "survival" function and the Kaplan-Meier plotter. Functional enrichment analysis was via by the R package "cluster Profiler" function. The association between STIM1 and tumor-infiltrating immune cells and immune markers was by the R package "GSVA" function and TIMER. STIM1 was differentially expressed and associated with distinct clinical stages in multiple tumors. The phosphorylation of STIM1 at S673 is highly expressed in clear cell renal carcinoma and lung adenocarcinoma tumors compared to normal tissues. STIM1 genetic alterations correlate with poor prognosis in several tumors, including ovarian cancer and lung squamous cell carcinomas. High STIM1 expression is associated with good or poor prognosis across diverse tumors. Overall survival (OS) analysis indicated that STIM1 is a favorable prognostic factor for patients with BRCA, KIRC, LIHC, LUAD, OV, SARC, and UCEC, and is a risk prognostic factor for BLCA, KIRP, STAD, and UVM. There is a close correlation between STIM1 expression and immune cell infiltration, immune-regulated genes, chemokines, and immune checkpoints in a variety of tumors. STIM1 functions differently in diverse tumors, playing an oncogenic or antitumor role. Moreover, It may serve as a prognostic biomarker and an immunotherapy target across multiple tumors.
期刊介绍:
The Journal of Environmental Pathology, Toxicology and Oncology publishes original research and reviews of factors and conditions that affect human and animal carcinogensis. Scientists in various fields of biological research, such as toxicologists, chemists, immunologists, pharmacologists, oncologists, pneumologists, and industrial technologists, will find this journal useful in their research on the interface between the environment, humans, and animals.