在具有不对称扩散的有限线性栖息地中确定最近的共同祖先

IF 1.2 4区 生物学 Q4 ECOLOGY
Kyle G. Teller , James M. Pringle
{"title":"在具有不对称扩散的有限线性栖息地中确定最近的共同祖先","authors":"Kyle G. Teller ,&nbsp;James M. Pringle","doi":"10.1016/j.tpb.2023.06.003","DOIUrl":null,"url":null,"abstract":"<div><p>Many species that are birthed in one location and become reproductive in another location can be treated as if in a one-dimensional habitat where dispersal is biased downstream. One example of such is planktonic larvae that disperse in coastal oceans, rivers, and streams. In these habitats, the dynamics of the dispersal are dominated by the movement of offspring in one direction and the distance between parents and offspring in the other direction does not matter. We study an idealized species with non-overlapping generations in a finite linear habitat that has no larval input from outside of the habitat and is therefore isolated from other populations. The most non-realistic assumption that we make is that there are non-overlapping generations, and this is an assumption to be considered in future work. We find that a biased dispersal in the habitat reduces the average time to the most recent common ancestor and causes the average location of the most recent common ancestor to move from the center of the habitat to the upstream edge of the habitat. Due to the decrease in the time to the most recent common ancestor and the shift of the average location to the upstream edge, the effective population size (N<span><math><msub><mrow></mrow><mrow><mi>e</mi></mrow></msub></math></span>) no longer depends on the census size and is dependent on the dispersal statistics. We determine the average time and location of the most recent common ancestor as a function of the larval dispersal statistics. The location of the most recent common ancestor becomes independent of the length of the habitat and is only dependent on the location of the upstream edge and the larval dispersal statistics.</p></div>","PeriodicalId":49437,"journal":{"name":"Theoretical Population Biology","volume":null,"pages":null},"PeriodicalIF":1.2000,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Determining the most recent common ancestor in a finite linear habitat with asymmetric dispersal\",\"authors\":\"Kyle G. Teller ,&nbsp;James M. Pringle\",\"doi\":\"10.1016/j.tpb.2023.06.003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Many species that are birthed in one location and become reproductive in another location can be treated as if in a one-dimensional habitat where dispersal is biased downstream. One example of such is planktonic larvae that disperse in coastal oceans, rivers, and streams. In these habitats, the dynamics of the dispersal are dominated by the movement of offspring in one direction and the distance between parents and offspring in the other direction does not matter. We study an idealized species with non-overlapping generations in a finite linear habitat that has no larval input from outside of the habitat and is therefore isolated from other populations. The most non-realistic assumption that we make is that there are non-overlapping generations, and this is an assumption to be considered in future work. We find that a biased dispersal in the habitat reduces the average time to the most recent common ancestor and causes the average location of the most recent common ancestor to move from the center of the habitat to the upstream edge of the habitat. Due to the decrease in the time to the most recent common ancestor and the shift of the average location to the upstream edge, the effective population size (N<span><math><msub><mrow></mrow><mrow><mi>e</mi></mrow></msub></math></span>) no longer depends on the census size and is dependent on the dispersal statistics. We determine the average time and location of the most recent common ancestor as a function of the larval dispersal statistics. The location of the most recent common ancestor becomes independent of the length of the habitat and is only dependent on the location of the upstream edge and the larval dispersal statistics.</p></div>\",\"PeriodicalId\":49437,\"journal\":{\"name\":\"Theoretical Population Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.2000,\"publicationDate\":\"2023-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Theoretical Population Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S004058092300045X\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Theoretical Population Biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S004058092300045X","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

许多在一个地方出生并在另一个地方繁殖的物种可以被视为在一维栖息地,那里的扩散偏向下游。其中一个例子是浮游幼虫,它们分散在沿海的海洋、河流和溪流中。在这些栖息地中,扩散的动态由后代在一个方向上的移动主导,父母和后代在另一个方向的距离无关紧要。我们研究了一个理想化的物种,该物种在有限的线性栖息地中具有不重叠的世代,没有来自栖息地外的幼虫输入,因此与其他种群隔离。我们做出的最不现实的假设是存在不重叠的世代,这是未来工作中需要考虑的假设。我们发现,栖息地中的偏差分散减少了到达最近共同祖先的平均时间,并导致最近共同祖先从栖息地的中心移动到栖息地的上游边缘。由于到最近共同祖先的时间减少,平均位置向上游边缘转移,有效种群规模(Ne)不再取决于人口普查规模,而是取决于扩散统计。我们根据幼虫扩散统计数据确定最近共同祖先的平均时间和位置。最近共同祖先的位置与栖息地的长度无关,仅取决于上游边缘的位置和幼虫扩散统计数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Determining the most recent common ancestor in a finite linear habitat with asymmetric dispersal

Many species that are birthed in one location and become reproductive in another location can be treated as if in a one-dimensional habitat where dispersal is biased downstream. One example of such is planktonic larvae that disperse in coastal oceans, rivers, and streams. In these habitats, the dynamics of the dispersal are dominated by the movement of offspring in one direction and the distance between parents and offspring in the other direction does not matter. We study an idealized species with non-overlapping generations in a finite linear habitat that has no larval input from outside of the habitat and is therefore isolated from other populations. The most non-realistic assumption that we make is that there are non-overlapping generations, and this is an assumption to be considered in future work. We find that a biased dispersal in the habitat reduces the average time to the most recent common ancestor and causes the average location of the most recent common ancestor to move from the center of the habitat to the upstream edge of the habitat. Due to the decrease in the time to the most recent common ancestor and the shift of the average location to the upstream edge, the effective population size (Ne) no longer depends on the census size and is dependent on the dispersal statistics. We determine the average time and location of the most recent common ancestor as a function of the larval dispersal statistics. The location of the most recent common ancestor becomes independent of the length of the habitat and is only dependent on the location of the upstream edge and the larval dispersal statistics.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Theoretical Population Biology
Theoretical Population Biology 生物-进化生物学
CiteScore
2.50
自引率
14.30%
发文量
43
审稿时长
6-12 weeks
期刊介绍: An interdisciplinary journal, Theoretical Population Biology presents articles on theoretical aspects of the biology of populations, particularly in the areas of demography, ecology, epidemiology, evolution, and genetics. Emphasis is on the development of mathematical theory and models that enhance the understanding of biological phenomena. Articles highlight the motivation and significance of the work for advancing progress in biology, relying on a substantial mathematical effort to obtain biological insight. The journal also presents empirical results and computational and statistical methods directly impinging on theoretical problems in population biology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信