GNG4作为一种潜在的预后预测因子,与结肠腺癌的免疫浸润相关

IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology
Juan Wang, Yanshuang Wang, Jiaming Zhou, Mengmeng Cai, Peng Guo, Tongde Du, Hui Zhang
{"title":"GNG4作为一种潜在的预后预测因子,与结肠腺癌的免疫浸润相关","authors":"Juan Wang,&nbsp;Yanshuang Wang,&nbsp;Jiaming Zhou,&nbsp;Mengmeng Cai,&nbsp;Peng Guo,&nbsp;Tongde Du,&nbsp;Hui Zhang","doi":"10.1111/jcmm.17847","DOIUrl":null,"url":null,"abstract":"<p>The tumour microenvironment (TME) and immunosuppression play an important role in colon cancer (CC) metastasis, which seriously affects the prognosis of CC. G protein subunit gamma 4 (GNG4) has been shown to participate in tumour progression and the tumour mutation burden (TMB) in colorectal cancer. However, the effect of GNG4 on the CC TME and immunology remains elusive. Weighted gene coexpression network analysis (WGCNA) was employed for screening aberrantly expressed genes associated with the immune score, and <i>GNG4</i> was then selected through prognostic and immune correlation analysis. Based on RNA sequencing data obtained from the TCGA and GEO databases, the expression pattern and immune characteristics of <i>GNG4</i> were comprehensively examined using a pan-cancer analysis. Upregulation of <i>GNG4</i> was linked to an adverse prognosis and immune inhibitory phenotype in CC. Pan-cancer analysis demonstrated higher <i>GNG4</i> expression in tumours than in paired normal tissue in human cancers. <i>GNG4</i> expression was closely related to prognosis, TMB, immune checkpoints (ICPs), microsatellite instability (MSI) and neoantigens. GNG4 promoted CC cell proliferation, migration and invasion and participated in immune regulation in the TME. Significantly, <i>GNG4</i> expression was found to negatively correlate with tumour-infiltrating immune cells, ICP, TMB and MSI in CC. <i>GNG4</i> expression predicted the immunotherapy response in the IMvigor210 cohort, suggesting that <i>GNG4</i> could be used as a potential biomarker in CC for prognostication and immunology. Moreover, the expression of <i>GNG4</i> predicted the immunotherapy response of ICB in CC.</p>","PeriodicalId":15215,"journal":{"name":"Journal of Cellular and Molecular Medicine","volume":"27 17","pages":"2517-2532"},"PeriodicalIF":5.3000,"publicationDate":"2023-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jcmm.17847","citationCount":"0","resultStr":"{\"title\":\"GNG4, as a potential predictor of prognosis, is correlated with immune infiltrates in colon adenocarcinoma\",\"authors\":\"Juan Wang,&nbsp;Yanshuang Wang,&nbsp;Jiaming Zhou,&nbsp;Mengmeng Cai,&nbsp;Peng Guo,&nbsp;Tongde Du,&nbsp;Hui Zhang\",\"doi\":\"10.1111/jcmm.17847\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The tumour microenvironment (TME) and immunosuppression play an important role in colon cancer (CC) metastasis, which seriously affects the prognosis of CC. G protein subunit gamma 4 (GNG4) has been shown to participate in tumour progression and the tumour mutation burden (TMB) in colorectal cancer. However, the effect of GNG4 on the CC TME and immunology remains elusive. Weighted gene coexpression network analysis (WGCNA) was employed for screening aberrantly expressed genes associated with the immune score, and <i>GNG4</i> was then selected through prognostic and immune correlation analysis. Based on RNA sequencing data obtained from the TCGA and GEO databases, the expression pattern and immune characteristics of <i>GNG4</i> were comprehensively examined using a pan-cancer analysis. Upregulation of <i>GNG4</i> was linked to an adverse prognosis and immune inhibitory phenotype in CC. Pan-cancer analysis demonstrated higher <i>GNG4</i> expression in tumours than in paired normal tissue in human cancers. <i>GNG4</i> expression was closely related to prognosis, TMB, immune checkpoints (ICPs), microsatellite instability (MSI) and neoantigens. GNG4 promoted CC cell proliferation, migration and invasion and participated in immune regulation in the TME. Significantly, <i>GNG4</i> expression was found to negatively correlate with tumour-infiltrating immune cells, ICP, TMB and MSI in CC. <i>GNG4</i> expression predicted the immunotherapy response in the IMvigor210 cohort, suggesting that <i>GNG4</i> could be used as a potential biomarker in CC for prognostication and immunology. Moreover, the expression of <i>GNG4</i> predicted the immunotherapy response of ICB in CC.</p>\",\"PeriodicalId\":15215,\"journal\":{\"name\":\"Journal of Cellular and Molecular Medicine\",\"volume\":\"27 17\",\"pages\":\"2517-2532\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2023-07-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jcmm.17847\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Cellular and Molecular Medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/jcmm.17847\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Cellular and Molecular Medicine","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/jcmm.17847","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

摘要

肿瘤微环境(tumor microenvironment, TME)和免疫抑制在结肠癌(colorectal cancer, CC)转移中起重要作用,严重影响CC的预后,G蛋白亚单位γ - 4 (GNG4)参与结直肠癌的肿瘤进展和肿瘤突变负荷(tumor mutation burden, TMB)。然而,GNG4对CC TME和免疫学的影响尚不清楚。采用加权基因共表达网络分析(Weighted gene co - expression network analysis, WGCNA)筛选与免疫评分相关的异常表达基因,通过预后和免疫相关性分析选择GNG4。基于TCGA和GEO数据库中获得的RNA测序数据,采用泛癌分析方法全面检查GNG4的表达模式和免疫特性。GNG4的上调与CC的不良预后和免疫抑制表型有关。泛癌症分析表明,人类癌症肿瘤中GNG4的表达高于配对正常组织。GNG4的表达与预后、TMB、免疫检查点(ICPs)、微卫星不稳定性(MSI)和新抗原密切相关。GNG4在TME中促进CC细胞增殖、迁移和侵袭,参与免疫调节。值得注意的是,GNG4的表达与CC的肿瘤浸润免疫细胞、ICP、TMB和MSI呈负相关,在IMvigor210队列中,GNG4的表达预测了免疫治疗的反应,这表明GNG4可以作为CC预后和免疫学的潜在生物标志物。此外,GNG4的表达预测了CC中ICB的免疫治疗反应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

GNG4, as a potential predictor of prognosis, is correlated with immune infiltrates in colon adenocarcinoma

GNG4, as a potential predictor of prognosis, is correlated with immune infiltrates in colon adenocarcinoma

The tumour microenvironment (TME) and immunosuppression play an important role in colon cancer (CC) metastasis, which seriously affects the prognosis of CC. G protein subunit gamma 4 (GNG4) has been shown to participate in tumour progression and the tumour mutation burden (TMB) in colorectal cancer. However, the effect of GNG4 on the CC TME and immunology remains elusive. Weighted gene coexpression network analysis (WGCNA) was employed for screening aberrantly expressed genes associated with the immune score, and GNG4 was then selected through prognostic and immune correlation analysis. Based on RNA sequencing data obtained from the TCGA and GEO databases, the expression pattern and immune characteristics of GNG4 were comprehensively examined using a pan-cancer analysis. Upregulation of GNG4 was linked to an adverse prognosis and immune inhibitory phenotype in CC. Pan-cancer analysis demonstrated higher GNG4 expression in tumours than in paired normal tissue in human cancers. GNG4 expression was closely related to prognosis, TMB, immune checkpoints (ICPs), microsatellite instability (MSI) and neoantigens. GNG4 promoted CC cell proliferation, migration and invasion and participated in immune regulation in the TME. Significantly, GNG4 expression was found to negatively correlate with tumour-infiltrating immune cells, ICP, TMB and MSI in CC. GNG4 expression predicted the immunotherapy response in the IMvigor210 cohort, suggesting that GNG4 could be used as a potential biomarker in CC for prognostication and immunology. Moreover, the expression of GNG4 predicted the immunotherapy response of ICB in CC.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
10.00
自引率
1.90%
发文量
496
审稿时长
28 weeks
期刊介绍: Bridging physiology and cellular medicine, and molecular biology and molecular therapeutics, Journal of Cellular and Molecular Medicine publishes basic research that furthers our understanding of the cellular and molecular mechanisms of disease and translational studies that convert this knowledge into therapeutic approaches.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信