识别凝血相关特征及其关键因子 RABIF 在肝癌细胞恶性肿瘤中的作用

IF 2.5 4区 医学 Q3 ONCOLOGY
Yanying Chen, Yin Li, Bingyi Zhou
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引用次数: 0

摘要

背景:肝癌是一种高发病率和高死亡率的癌症,而凝血是肝癌发展的潜在致癌机制:本研究旨在揭示凝血在肝癌中的作用:方法:我们应用 LASSO 建立了凝血相关风险评分(CRS)和临床提名图,并进行了独立验证。评估了各方面的异质性,包括功能富集、SNV、CN、免疫细胞浸润、免疫通路、免疫检查点和基因组不稳定性指标。此外,还检测了CRS基因的预后价值。我们从LASSO系数中筛选出了与凝血相关的关键风险基因,并对其进行了经孔试验和克隆形成试验,分别证实了其在肝癌细胞迁移和克隆形成能力中的作用:在两个数据集中,CRS和提名图都能准确预测患者的生存期。高CRS组与较高的细胞周期、DNA修复、TP53突变率、扩增和较低的1号染色体缺失率相关。在免疫细胞浸润方面,我们注意到Treg浸润增加,免疫检查点和基因组不稳定性指数全面上调。此外,每个 CRS 基因都会影响患者的生存。最后,我们发现RABIF是CRS中风险最大的基因。它的敲除抑制了肝癌细胞的迁移和克隆形成能力,而RABIF的过表达可以挽救这种能力:结论:我们建立了一个强大的 CRS,它具有作为预后和免疫治疗指标的巨大潜力。重要的是,我们发现 RABIF 是一种促进肝癌细胞迁移和克隆形成的癌基因,揭示了潜在的病理机制,并为肝癌治疗提供了新的治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of the Roles of Coagulation-related Signature and its Key Factor RABIF in Hepatoma Cell Malignancy.

Background: Hepatoma is a high morbidity and mortality cancer, and coagulation is a potential oncogenic mechanism for hepatoma development.

Objective: In this study, we aimed to reveal the role of coagulation in hepatoma.

Methods: We applied the LASSO to construct a coagulation-related risk score (CRS) and a clinical nomogram with independent validation. The heterogeneity of various aspects, including functional enrichment, SNV, CN, immunocyte infiltration, immune pathways, immune checkpoint, and genomic instability indexes, was evaluated. Besides, the prognostic value of the CRS genes was tested. We selected the critical risky gene related to coagulation from the LASSO coefficients, for which we applied transwell and clone formation assays to confirm its roles in hepatoma cell migration and clone formation ability, respectively.

Results: The CRS and the nomogram predicted patients' survival with good accuracy in both two datasets. The high-CRS group was associated with higher cell cycle, DNA repair, TP53 mutation rates, amplification, and lower deletion rates at chromosome 1. For immunocyte infiltration, we noticed increased Treg infiltration and globally upregulated immune checkpoints and genomic instability indexes. Additionally, every single CRS gene affected the patient's survival. Finally, we observed that RABIF was the riskiest gene in the CRS. Its knockdown suppressed hepatoma cell migration and clone formation capability, which could be rescued by RABIF overexpression.

Conclusion: We built a robust CRS with great potential as a prognosis and immunotherapeutic indicator. Importantly, we identified RABIF as an oncogene, promoting hepatoma cell migration and clone formation, revealing underlying pathological mechanisms, and providing novel therapeutic targets for hepatoma treatment.

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来源期刊
CiteScore
4.50
自引率
7.10%
发文量
55
审稿时长
3 months
期刊介绍: Aims & Scope Recent Patents on Anti-Cancer Drug Discovery publishes review and research articles that reflect or deal with studies in relation to a patent, application of reported patents in a study, discussion of comparison of results regarding application of a given patent, etc., and also guest edited thematic issues on recent patents in the field of anti-cancer drug discovery e.g. on novel bioactive compounds, analogs, targets & predictive biomarkers & drug efficacy biomarkers. The journal also publishes book reviews of eBooks and books on anti-cancer drug discovery. A selection of important and recent patents on anti-cancer drug discovery is also included in the journal. The journal is essential reading for all researchers involved in anti-cancer drug design and discovery. The journal also covers recent research (where patents have been registered) in fast emerging therapeutic areas/targets & therapeutic agents related to anti-cancer drug discovery.
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