用于突触表征的高效基于采样的贝叶斯主动学习。

IF 4.3 2区 生物学
PLoS Computational Biology Pub Date : 2023-08-21 eCollection Date: 2023-08-01 DOI:10.1371/journal.pcbi.1011342
Camille Gontier, Simone Carlo Surace, Igor Delvendahl, Martin Müller, Jean-Pascal Pfister
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引用次数: 0

摘要

贝叶斯主动学习(BAL)是一种用于学习模型参数的有效框架,其中选择输入刺激以最大化观测值和未知参数之间的相互信息。然而,BAL对实验的适用性是有限的,因为它需要实时执行高维积分和优化。当前的方法要么过于耗时,要么只适用于特定的模型。在这里,我们提出了一个基于有效采样的贝叶斯主动学习(ESB-BAL)框架,该框架足够有效,可以用于实时生物实验。我们将我们的方法应用于从突触后对诱发的突触前动作电位的反应来估计化学突触的参数的问题。使用合成数据和突触全细胞膜片钳记录,我们表明我们的方法可以提高基于模型的推断的精度,从而为生理学中更系统、更有效的实验设计铺平道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Efficient sampling-based Bayesian Active Learning for synaptic characterization.

Efficient sampling-based Bayesian Active Learning for synaptic characterization.

Efficient sampling-based Bayesian Active Learning for synaptic characterization.

Efficient sampling-based Bayesian Active Learning for synaptic characterization.

Bayesian Active Learning (BAL) is an efficient framework for learning the parameters of a model, in which input stimuli are selected to maximize the mutual information between the observations and the unknown parameters. However, the applicability of BAL to experiments is limited as it requires performing high-dimensional integrations and optimizations in real time. Current methods are either too time consuming, or only applicable to specific models. Here, we propose an Efficient Sampling-Based Bayesian Active Learning (ESB-BAL) framework, which is efficient enough to be used in real-time biological experiments. We apply our method to the problem of estimating the parameters of a chemical synapse from the postsynaptic responses to evoked presynaptic action potentials. Using synthetic data and synaptic whole-cell patch-clamp recordings, we show that our method can improve the precision of model-based inferences, thereby paving the way towards more systematic and efficient experimental designs in physiology.

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来源期刊
PLoS Computational Biology
PLoS Computational Biology 生物-生化研究方法
CiteScore
7.10
自引率
4.70%
发文量
820
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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