计算洞察儿科腺病毒抑制剂:药物再利用的计算机策略。

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Kaushik Sarkar, Subrata Nandi, Rajesh Kumar Das
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引用次数: 0

摘要

人类腺病毒(HADV)感染可对儿童造成严重威胁,导致各种呼吸道疾病和其他并发症。尤其是免疫系统较弱的儿童很容易受到严重的腺病毒感染,死亡率很高。本研究的重点是提出新的抗病毒药物,作为儿童 HADV 的主要抑制剂。因此,本研究采用分子对接、分子动力学(MD)模拟、分子力学泊松-波尔兹曼表面积(MM-PBSA)结合自由能计算、密度泛函理论(DFT)和药代动力学分析等重要计算方法,对用于儿童的几种抗病毒药物进行了研究,以寻找新的 HADV 抑制剂。对标准西多福韦和其他配体进行的分子对接表明,索非布韦的结合能最高(-10.8 kcal/mol),其次是巴洛沙韦 marboxil(-10.36 kcal/mol)。此外,利用 MD 模拟(100 ns)和 MM-PBSA 进行的分子相互作用分析表明,巴洛沙韦羧酸盐与 HADV 形成的蛋白配体复合物最为稳定,其次是索非布韦。巴洛沙韦羧酸酯和索非布韦的结合自由能分别为-61.724 kJ/mol和-48.123 kJ/mol。此外,还研究了这些化合物的 DFT 特性和药物相似性。总之,建议将两种抗病毒药物(如巴洛沙韦马勃吉酯和索非布韦作为抗 HADV 的先导再用途候选药物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computational insights into pediatric adenovirus inhibitors: in silico strategies for drug repurposing.

Human adenovirus (HADV) infection can pose a serious threat to children, leading to a variety of respiratory illnesses and other complications. Particularly, children with weak immune systems are vulnerable to severe adenovirus infections with high mortality. The main focus of this study is to propose new antiviral agents as lead HADV inhibitors for children. So, several antiviral agents used in children were subjected to finding new HADV inhibitors using important computational methods of molecular docking, molecular dynamics (MD) simulation, Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) binding free energy calculations, density functional theory (DFT), and pharmacokinetic analysis. Molecular docking of standard cidofovir along with other ligands, suggested that sofosbuvir has the highest binding energy (-10.8 kcal/mol), followed by baloxavir marboxil (-10.36 kcal/mol). Further, the analysis of molecular interactions using MD simulation (100 ns) and MM-PBSA indicated that baloxavir marboxil has formed the most stable protein-ligand complex with HADV, followed by sofosbuvir. The binding free energies of baloxavir marboxil and sofosbuvir were found to be -61.724 kJ/mol and -48.123 kJ/mol, respectively. The DFT and drug-likeness properties of these compounds were also investigated. Overall, two antiviral agents, such as baloxavir marboxil, and sofosbuvir are suggested as lead repurposed candidates against HADV.Communicated by Ramaswamy H. Sarma.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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