Zoltan Erdos, David John Studholme, Ben Raymond, Manmohan D Sharma
{"title":"<i>De novo</i> genome assembly of <i>Akanthomyces muscarius</i>, a biocontrol agent of insect agricultural pests.","authors":"Zoltan Erdos, David John Studholme, Ben Raymond, Manmohan D Sharma","doi":"10.1099/acmi.0.000568.v3","DOIUrl":null,"url":null,"abstract":"<p><p>The entomopathogenic fungus <i>Akanthomyces muscarius</i> is commonly used in agriculture to manage insect pests. Besides its use as a commercially important biological control agent, it also presents a potential model for studying host-pathogen interactions and the evolution of virulence in a laboratory setting. Here, we describe the first high-quality genome sequence for <i>A. muscarius</i>. We used long- and short-read sequencing to assemble a sequence of 36.1 Mb with an N<sub>50</sub> of 4.9 Mb. Genome annotation predicted 12347 genes, with 96.6 % completeness based on the core Hypocrealen gene set. The high-quality assembly and annotation of <i>A. muscarius</i> presented in this study provides an essential tool for future research on this commercially important species.</p>","PeriodicalId":6956,"journal":{"name":"Access Microbiology","volume":"5 6","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323777/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Access Microbiology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1099/acmi.0.000568.v3","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
The entomopathogenic fungus Akanthomyces muscarius is commonly used in agriculture to manage insect pests. Besides its use as a commercially important biological control agent, it also presents a potential model for studying host-pathogen interactions and the evolution of virulence in a laboratory setting. Here, we describe the first high-quality genome sequence for A. muscarius. We used long- and short-read sequencing to assemble a sequence of 36.1 Mb with an N50 of 4.9 Mb. Genome annotation predicted 12347 genes, with 96.6 % completeness based on the core Hypocrealen gene set. The high-quality assembly and annotation of A. muscarius presented in this study provides an essential tool for future research on this commercially important species.