Diffusion in intact secondary cell wall models of plants at different equilibrium moisture content

Q1 Immunology and Microbiology
Daipayan Sarkar , Lintao Bu , Joseph E. Jakes , Jacob K. Zieba , Isaiah D. Kaufman , Michael F. Crowley , Peter N. Ciesielski , Josh V. Vermaas
{"title":"Diffusion in intact secondary cell wall models of plants at different equilibrium moisture content","authors":"Daipayan Sarkar ,&nbsp;Lintao Bu ,&nbsp;Joseph E. Jakes ,&nbsp;Jacob K. Zieba ,&nbsp;Isaiah D. Kaufman ,&nbsp;Michael F. Crowley ,&nbsp;Peter N. Ciesielski ,&nbsp;Josh V. Vermaas","doi":"10.1016/j.tcsw.2023.100105","DOIUrl":null,"url":null,"abstract":"<div><p>Secondary plant cell walls are composed of carbohydrate and lignin polymers, and collectively represent a significant renewable resource. Leveraging these resources depends in part on a mechanistic understanding for diffusive processes within plant cell walls. Common wood protection treatments and biomass conversion processes to create biorefinery feedstocks feature ion or solvent diffusion within the cell wall. X-ray fluorescence microscopy experiments have determined that ionic diffusion rates are dependent on cell wall hydration as well as the ionic species through non-linear relationships. In this work, we use classical molecular dynamics simulations to map the diffusion behavior of different plant cell wall components (cellulose, hemicellulose, lignin), ions (Na<sup>+</sup>, K<sup>+</sup>, Cu<sup>2+</sup>, Cl<sup>−</sup>) and water within a model for an intact plant cell wall at various hydration states (3–30 wt% water). From these simulations, we analyze the contacts between different plant cell wall components with each other and their interaction with the ions. Generally, diffusion increases with increasing hydration, with lignin and hemicellulose components increasing diffusion by an order of magnitude over the tested hydration range. Ion diffusion depends on charge. Positively charged cations preferentially interact with hemicellulose components, which include negatively charged carboxylates. As a result, positive ions diffuse more slowly than negatively charged ions. Measured diffusion coefficients are largely observed to best fit piecewise linear trends, with an inflection point between 10 and 15% hydration. These observations shed light onto the molecular mechanisms for diffusive processes within secondary plant cell walls at atomic resolution.</p></div>","PeriodicalId":36539,"journal":{"name":"Cell Surface","volume":"9 ","pages":"Article 100105"},"PeriodicalIF":0.0000,"publicationDate":"2023-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090443/pdf/main.pdf","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Cell Surface","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468233023000129","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Immunology and Microbiology","Score":null,"Total":0}
引用次数: 2

Abstract

Secondary plant cell walls are composed of carbohydrate and lignin polymers, and collectively represent a significant renewable resource. Leveraging these resources depends in part on a mechanistic understanding for diffusive processes within plant cell walls. Common wood protection treatments and biomass conversion processes to create biorefinery feedstocks feature ion or solvent diffusion within the cell wall. X-ray fluorescence microscopy experiments have determined that ionic diffusion rates are dependent on cell wall hydration as well as the ionic species through non-linear relationships. In this work, we use classical molecular dynamics simulations to map the diffusion behavior of different plant cell wall components (cellulose, hemicellulose, lignin), ions (Na+, K+, Cu2+, Cl) and water within a model for an intact plant cell wall at various hydration states (3–30 wt% water). From these simulations, we analyze the contacts between different plant cell wall components with each other and their interaction with the ions. Generally, diffusion increases with increasing hydration, with lignin and hemicellulose components increasing diffusion by an order of magnitude over the tested hydration range. Ion diffusion depends on charge. Positively charged cations preferentially interact with hemicellulose components, which include negatively charged carboxylates. As a result, positive ions diffuse more slowly than negatively charged ions. Measured diffusion coefficients are largely observed to best fit piecewise linear trends, with an inflection point between 10 and 15% hydration. These observations shed light onto the molecular mechanisms for diffusive processes within secondary plant cell walls at atomic resolution.

不同平衡含水量下植物完整次生细胞壁模型的扩散
次生植物细胞壁由碳水化合物和木质素聚合物组成,共同代表了一种重要的可再生资源。利用这些资源在一定程度上取决于对植物细胞壁内扩散过程的机械理解。常见的木材保护处理和生物质转化过程以产生生物精炼原料,其特征是离子或溶剂在细胞壁内扩散。X射线荧光显微镜实验已经确定,离子扩散速率通过非线性关系取决于细胞壁水合作用以及离子种类。在这项工作中,我们使用经典的分子动力学模拟来绘制不同植物细胞壁成分(纤维素、半纤维素、木质素)、离子(Na+、K+、Cu2+、Cl−)和水在不同水合状态(3–30 wt%水)下完整植物细胞壁模型中的扩散行为。通过这些模拟,我们分析了不同植物细胞壁成分之间的相互接触及其与离子的相互作用。通常,扩散随着水合作用的增加而增加,木质素和半纤维素组分在测试的水合作用范围内扩散增加了一个数量级。离子的扩散取决于电荷。带正电荷的阳离子优先与半纤维素成分相互作用,半纤维素成分包括带负电荷的羧酸盐。因此,正离子比带负电的离子扩散得更慢。测量的扩散系数在很大程度上被观察到最适合分段线性趋势,拐点在10%和15%之间。这些观察结果揭示了在原子分辨率下次生植物细胞壁内扩散过程的分子机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Cell Surface
Cell Surface Immunology and Microbiology-Applied Microbiology and Biotechnology
CiteScore
6.10
自引率
0.00%
发文量
18
审稿时长
49 days
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信