Response Surface Methodology to Optimize the Expression Efficiency of Recombinant Reteplase.

IF 1.6 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Farhad Farzaneh, Sako Mirzaie, Ehsan Dehnavi, Mojtaba Aghaeepoor, Shirin Farzaneh, Navid Pourzardosht, Saeed Khalili
{"title":"Response Surface Methodology to Optimize the Expression Efficiency of Recombinant Reteplase.","authors":"Farhad Farzaneh, Sako Mirzaie, Ehsan Dehnavi, Mojtaba Aghaeepoor, Shirin Farzaneh, Navid Pourzardosht, Saeed Khalili","doi":"10.30498/ijb.2023.330285.3288","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Over expression of Reteplase enzyme has already been studies in the periplasmic space of <i>Escherichia coli</i> (<i>E. coli</i>). However, the role different factors in its expresssin rate remained to be elucidated.</p><p><strong>Objectives: </strong>Optical cell density (OD), IPTG concentration, and expression time are highly effective in the protein expression rates. Therefore, we aimed to determine the optimum levels of these factors for reteplase expression using response surface methodology (RSM).</p><p><strong>Materials and methods: </strong>The pET21b plasmid was used to sub-clone the designed reteplase gene. Then, the gene was transformed into <i>E. coli</i> BL21 strain. Induction of expression was done by IPTG and analyzed by the SDS page. experiments were designed using the RMS, while the effects of different conditions were evaluated using the Real time-PCR.</p><p><strong>Results: </strong>Sequence optimization removed all undesirable sequences of the designed gene. Transformation into <i>E. coli</i> BL21 was confirmed with an 1152 bp band on the agarose gel. A 39 kDa expression band on the SDS gel confirmed the gene expression. Performing 20 RSM-designed experiments, the optimum levels for IPTG concentration and OD were determined as 0.34mM and 5.6, respectively. Moreover, the optimum level of expression time was demonstrated to be 11.91 hours. The accuracy of the regression model for reteplase overexpression was confirmed by an F-value equal to 25.31 and a meager probability value [(Prob > F) < 0.0001]. The real-time-PCR results indicated that the performed calculations were highly accurate.</p><p><strong>Conclusion: </strong>The obtained results indicate that IPTG concentration, OD, and expression time are significantly involved in the augmentation of recombinant reteplase expression. To the best of our knowledge, this is the first study to assess the combined effect of these factors on reteplase expression. Further RSM-based experiments would bring about new insights regarding the best conditions for reteplase expression.</p>","PeriodicalId":14492,"journal":{"name":"Iranian Journal of Biotechnology","volume":"21 2","pages":"e3288"},"PeriodicalIF":1.6000,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/73/33/IJB-21-e3288.PMC10203180.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Iranian Journal of Biotechnology","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.30498/ijb.2023.330285.3288","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Background: Over expression of Reteplase enzyme has already been studies in the periplasmic space of Escherichia coli (E. coli). However, the role different factors in its expresssin rate remained to be elucidated.

Objectives: Optical cell density (OD), IPTG concentration, and expression time are highly effective in the protein expression rates. Therefore, we aimed to determine the optimum levels of these factors for reteplase expression using response surface methodology (RSM).

Materials and methods: The pET21b plasmid was used to sub-clone the designed reteplase gene. Then, the gene was transformed into E. coli BL21 strain. Induction of expression was done by IPTG and analyzed by the SDS page. experiments were designed using the RMS, while the effects of different conditions were evaluated using the Real time-PCR.

Results: Sequence optimization removed all undesirable sequences of the designed gene. Transformation into E. coli BL21 was confirmed with an 1152 bp band on the agarose gel. A 39 kDa expression band on the SDS gel confirmed the gene expression. Performing 20 RSM-designed experiments, the optimum levels for IPTG concentration and OD were determined as 0.34mM and 5.6, respectively. Moreover, the optimum level of expression time was demonstrated to be 11.91 hours. The accuracy of the regression model for reteplase overexpression was confirmed by an F-value equal to 25.31 and a meager probability value [(Prob > F) < 0.0001]. The real-time-PCR results indicated that the performed calculations were highly accurate.

Conclusion: The obtained results indicate that IPTG concentration, OD, and expression time are significantly involved in the augmentation of recombinant reteplase expression. To the best of our knowledge, this is the first study to assess the combined effect of these factors on reteplase expression. Further RSM-based experiments would bring about new insights regarding the best conditions for reteplase expression.

Abstract Image

Abstract Image

Abstract Image

响应面法优化重组网状血红蛋白酶的表达效率
背景:在大肠杆菌(E.coli)的外质粒空间中过度表达去甲肾上腺素酶(Reteplase)已有研究。然而,不同因素在其表达率中的作用仍有待阐明:目的:细胞光密度(OD)、IPTG 浓度和表达时间对蛋白质表达率的影响很大。因此,我们旨在利用响应面方法学(RSM)确定这些因素在网胃膜酶表达中的最佳水平:用 pET21b 质粒亚克隆设计的网膜水解酶基因。然后,将该基因转化到大肠杆菌 BL21 菌株中。用 RMS 设计实验,用 Real time-PCR 评估不同条件的影响:结果:序列优化去除了所设计基因的所有不良序列。转入大肠杆菌 BL21 后,琼脂糖凝胶上出现了一条 1152 bp 的表达带。SDS 凝胶上的 39 kDa 表达带证实了基因的表达。通过 20 次 RSM 设计的实验,确定 IPTG 浓度和光密度的最佳水平分别为 0.34mM 和 5.6。此外,最佳表达时间为 11.91 小时。F 值等于 25.31,概率值[(Prob > F)< 0.0001]很小,这证实了网状剥脱酶过表达回归模型的准确性。实时荧光定量PCR结果表明,计算结果非常准确:结论:所得结果表明,IPTG 浓度、OD 和表达时间对重组网蛋白酶的表达有显著的促进作用。据我们所知,这是第一项评估这些因素对网状剥脱酶表达的综合影响的研究。进一步的基于 RSM 的实验将为网蛋白酶表达的最佳条件带来新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Iranian Journal of Biotechnology
Iranian Journal of Biotechnology BIOTECHNOLOGY & APPLIED MICROBIOLOGY-
CiteScore
2.60
自引率
7.70%
发文量
20
期刊介绍: Iranian Journal of Biotechnology (IJB) is published quarterly by the National Institute of Genetic Engineering and Biotechnology. IJB publishes original scientific research papers in the broad area of Biotechnology such as, Agriculture, Animal and Marine Sciences, Basic Sciences, Bioinformatics, Biosafety and Bioethics, Environment, Industry and Mining and Medical Sciences.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信