Dietary and supplemental intake of vitamins C and E is associated with altered DNA methylation in an epigenome-wide association study meta-analysis.

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Amena Keshawarz, Roby Joehanes, Jiantao Ma, Gha Young Lee, Ricardo Costeira, Pei-Chien Tsai, Olatz M Masachs, Jordana T Bell, Rory Wilson, Barbara Thorand, Juliane Winkelmann, Annette Peters, Jakob Linseisen, Melanie Waldenberger, Terho Lehtimäki, Pashupati P Mishra, Mika Kähönen, Olli Raitakari, Mika Helminen, Carol A Wang, Phillip E Melton, Rae-Chi Huang, Craig E Pennell, Therese A O'Sullivan, Carolina Ochoa-Rosales, Trudy Voortman, Joyce B J van Meurs, Kristin L Young, Misa Graff, Yujie Wang, Douglas P Kiel, Caren E Smith, Paul F Jacques, Daniel Levy
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引用次数: 0

Abstract

Background: Dietary intake of antioxidants such as vitamins C and E protect against oxidative stress, and may also be associated with altered DNA methylation patterns.

Methods: We meta-analysed epigenome-wide association study (EWAS) results from 11,866 participants across eight population-based cohorts to evaluate the association between self-reported dietary and supplemental intake of vitamins C and E with DNA methylation. EWAS were adjusted for age, sex, BMI, caloric intake, blood cell type proportion, smoking status, alcohol consumption, and technical covariates. Significant results of the meta-analysis were subsequently evaluated in gene set enrichment analysis (GSEA) and expression quantitative trait methylation (eQTM) analysis.

Results: In meta-analysis, methylation at 4,656 CpG sites was significantly associated with vitamin C intake at FDR ≤ 0.05. The most significant CpG sites associated with vitamin C (at FDR ≤ 0.01) were enriched for pathways associated with systems development and cell signalling in GSEA, and were associated with downstream expression of genes enriched in the immune response in eQTM analysis. Furthermore, methylation at 160 CpG sites was significantly associated with vitamin E intake at FDR ≤ 0.05, but GSEA and eQTM analysis of the top most significant CpG sites associated with vitamin E did not identify significant enrichment of any biological pathways investigated.

Conclusions: We identified significant associations of many CpG sites with vitamin C and E intake, and our results suggest that vitamin C intake may be associated with systems development and the immune response.

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在一项全表观基因组关联研究荟萃分析中,膳食和补充摄入维生素C和E与DNA甲基化改变有关。
背景:饮食中摄入抗氧化剂,如维生素C和E,可以防止氧化应激,也可能与DNA甲基化模式的改变有关。方法:我们荟萃分析了来自八个基于人群的队列中11866名参与者的表观基因组全关联研究(EWAS)结果,以评估自我报告的饮食和补充维生素C和E摄入与DNA甲基化之间的关系。EWAS根据年龄、性别、BMI、热量摄入、血细胞类型比例、吸烟状况、饮酒量和技术协变量进行了调整。随后在基因集富集分析(GSEA)和表达定量性状甲基化(eQTM)分析中评估了荟萃分析的显著结果。结果:在荟萃分析中,在FDR≤0.05时,4656个CpG位点的甲基化与维生素C摄入显著相关。与维生素C相关的最显著的CpG位点(FDR≤0.01)在GSEA中富集了与系统发育和细胞信号传导相关的途径,并且在eQTM分析中与免疫反应中富集的基因的下游表达相关。此外,在FDR≤0.05时,160个CpG位点的甲基化与维生素E摄入显著相关,但对与维生素E相关的最显著CpG位点进行的GSEA和eQTM分析没有发现所研究的任何生物途径的显著富集。结论:我们发现许多CpG位点与维生素C和E的摄入有显著关联,我们的研究结果表明,维生素C的摄入可能与系统发育和免疫反应有关。
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来源期刊
Epigenetics
Epigenetics 生物-生化与分子生物学
CiteScore
6.80
自引率
2.70%
发文量
82
审稿时长
3-8 weeks
期刊介绍: Epigenetics publishes peer-reviewed original research and review articles that provide an unprecedented forum where epigenetic mechanisms and their role in diverse biological processes can be revealed, shared, and discussed. Epigenetics research studies heritable changes in gene expression caused by mechanisms others than the modification of the DNA sequence. Epigenetics therefore plays critical roles in a variety of biological systems, diseases, and disciplines. Topics of interest include (but are not limited to): DNA methylation Nucleosome positioning and modification Gene silencing Imprinting Nuclear reprogramming Chromatin remodeling Non-coding RNA Non-histone chromosomal elements Dosage compensation Nuclear organization Epigenetic therapy and diagnostics Nutrition and environmental epigenetics Cancer epigenetics Neuroepigenetics
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