Challenges of in situ hybridization in miRNA analysis of triple-negative breast cancer morphological diversity.

IF 2 4区 医学 Q3 ONCOLOGY
Markéta Kolečková, Michala Bezděková, Jan Bouchal, Mária Janíková, Júlia Bohošová, Ondřej Slabý, Marek Svoboda, Josef Srovnal, Katherine Vomáčková, Ivo Überall, Zdeněk Kolář
{"title":"Challenges of in situ hybridization in miRNA analysis of triple-negative breast cancer morphological diversity.","authors":"Markéta Kolečková,&nbsp;Michala Bezděková,&nbsp;Jan Bouchal,&nbsp;Mária Janíková,&nbsp;Júlia Bohošová,&nbsp;Ondřej Slabý,&nbsp;Marek Svoboda,&nbsp;Josef Srovnal,&nbsp;Katherine Vomáčková,&nbsp;Ivo Überall,&nbsp;Zdeněk Kolář","doi":"10.4149/neo_2023_220519N533","DOIUrl":null,"url":null,"abstract":"<p><p>miRNA expression in triple-negative breast cancers (TNBC) has mainly been studied from a methodological viewpoint. However, it has not been considered that miRNA expression profile may be associated with a specific morphological entity inside every tumor. The verification of this hypothesis on a set of 25 TNBCs was the subject of our previous work, where we confirmed specific expression of the studied miRNAs in 82 samples of different morphologies including inflammatory infiltrate, spindle cell, clear cell, and metastases after RNA extraction and purification as well as microchip and biostatistical analysis. In the current work, we demonstrate a low suitability of in situ hybridization method for miRNA detection compared to RT-qPCR, and in detail discuss the biological role of 8 miRNAs with the most significant changes of expression.</p>","PeriodicalId":19266,"journal":{"name":"Neoplasma","volume":null,"pages":null},"PeriodicalIF":2.0000,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neoplasma","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.4149/neo_2023_220519N533","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ONCOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

miRNA expression in triple-negative breast cancers (TNBC) has mainly been studied from a methodological viewpoint. However, it has not been considered that miRNA expression profile may be associated with a specific morphological entity inside every tumor. The verification of this hypothesis on a set of 25 TNBCs was the subject of our previous work, where we confirmed specific expression of the studied miRNAs in 82 samples of different morphologies including inflammatory infiltrate, spindle cell, clear cell, and metastases after RNA extraction and purification as well as microchip and biostatistical analysis. In the current work, we demonstrate a low suitability of in situ hybridization method for miRNA detection compared to RT-qPCR, and in detail discuss the biological role of 8 miRNAs with the most significant changes of expression.

原位杂交在三阴性乳腺癌形态多样性miRNA分析中的挑战。
miRNA在三阴性乳腺癌(TNBC)中的表达主要是从方法学的角度来研究的。然而,尚未考虑到miRNA表达谱可能与每种肿瘤中的特定形态实体相关。在一组25个tnbc上验证这一假设是我们之前工作的主题,我们在RNA提取和纯化以及微芯片和生物统计学分析后,在82个不同形态的样本中(包括炎症浸润、梭形细胞、透明细胞和转移)证实了所研究的mirna的特异性表达。在目前的工作中,我们论证了原位杂交方法相对于RT-qPCR检测miRNA的适用性较低,并详细讨论了表达变化最显著的8种miRNA的生物学作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Neoplasma
Neoplasma 医学-肿瘤学
CiteScore
5.40
自引率
0.00%
发文量
238
审稿时长
3 months
期刊介绍: The journal Neoplasma publishes articles on experimental and clinical oncology and cancer epidemiology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信