QSAR classification model for diverse series of antifungal agents based on binary coyote optimization algorithm.

IF 2.3 3区 环境科学与生态学 Q3 CHEMISTRY, MULTIDISCIPLINARY
A M Al-Fakih, M K Qasim, Z Y Algamal, A M Alharthi, M H Zainal-Abidin
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引用次数: 0

Abstract

One of the recently developed metaheuristic algorithms, the coyote optimization algorithm (COA), has shown to perform better in a number of difficult optimization tasks. The binary form, BCOA, is used in this study as a solution to the descriptor selection issue in classifying diverse antifungal series. Z-shape transfer functions (ZTF) are evaluated to verify their efficiency in improving BCOA performance in QSAR classification based on classification accuracy (CA), the geometric mean of sensitivity and specificity (G-mean), and the area under the curve (AUC). The Kruskal-Wallis test is also applied to show the statistical differences between the functions. The efficacy of the best suggested transfer function, ZTF4, is further assessed by comparing it to the most recent binary algorithms. The results prove that ZTF, especially ZTF4, significantly improves the performance of the original BCOA. The ZTF4 function yields the best CA and G-mean of 99.03% and 0.992%, respectively. It shows the fastest convergence behaviour compared to other binary algorithms. It takes the fewest iterations to reach high classification performance and selects the fewest descriptors. In conclusion, the obtained results indicate the ability of the ZTF4-based BCOA to find the smallest subset of descriptors while maintaining the best classification accuracy performance.

基于二元土狼优化算法的多系列抗真菌药QSAR分类模型。
最近发展的一种元启发式算法,郊狼优化算法(COA),在许多困难的优化任务中表现得更好。在本研究中,二元形式BCOA被用于解决描述符选择问题,以分类不同的抗真菌系列。基于分类精度(CA)、灵敏度和特异性的几何平均值(G-mean)和曲线下面积(AUC),对z形传递函数(ZTF)进行评价,以验证其在QSAR分类中提高BCOA性能的效率。还应用了Kruskal-Wallis检验来显示函数之间的统计差异。最佳建议的传递函数ZTF4的有效性,通过将其与最新的二进制算法进行比较,进一步评估。结果证明,ZTF,尤其是ZTF4,显著提高了原BCOA的性能。ZTF4函数的CA和g均值分别为99.03%和0.992%。与其他二进制算法相比,它具有最快的收敛行为。它需要最少的迭代来达到较高的分类性能,并选择最少的描述符。综上所述,得到的结果表明基于ztf4的BCOA能够找到最小的描述子子集,同时保持最佳的分类精度性能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
5.20
自引率
20.00%
发文量
78
审稿时长
>24 weeks
期刊介绍: SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.
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