General Utilities for Genotyping Study (GUGS): A Comprehensive Application in Genotype and Sequence Data Manipulation

IF 0.3 4区农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY

Jarq-japan Agricultural Research Quarterly Pub Date : 2021-10-01 DOI:10.6090/jarq.55.333

T. Shimizu

引用次数: 0

Abstract

General Utilities for Genotyping Study (GUGS) is a toolbox for aiding the analysis of DNA marker data and its design in Microsoft Excel (MS Excel). GUGS provides more than 100 flexible functions for the manipulation, evaluation, and conversion of genotype data. It also provides functionalities for genotype format conversion to support linkage analysis using JoinMap software, frequency analysis for population genetics, parentage analysis, and statistical genetic analysis. Its functionality for the manipulation of nucleotide or amino acid sequences also assists DNA marker design. These GUGS features enable users to conduct all steps from DNA marker design to preliminary evaluation, data analysis, and format conversion for advanced study in a single environment without having to export/ import data. GUGS is freely available at https://github.com/tokurou/GUGS under the GPL v3 license. Discipline: Crop Science Additional key words: bioinformatics, breeding, DNA marker, genetics, linkage analysis

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基因分型研究的通用工具(GUGS):基因分型和序列数据操作的综合应用

基因分型研究通用工具(GUGS)是一个工具箱，用于帮助分析DNA标记数据及其在微软Excel (MS Excel)中的设计。GUGS为基因型数据的操作、评估和转换提供了100多种灵活的功能。它还提供了基因型格式转换的功能，以支持使用JoinMap软件进行链接分析，用于群体遗传学的频率分析，亲子分析和统计遗传分析。其操作核苷酸或氨基酸序列的功能也有助于DNA标记设计。这些GUGS功能使用户能够在单一环境中进行从DNA标记设计到初步评估，数据分析和格式转换的所有步骤，以进行高级研究，而无需导出/导入数据。GUGS在GPL v3许可下可在https://github.com/tokurou/GUGS免费获得。附加关键词:生物信息学，育种，DNA标记，遗传学，连锁分析

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来源期刊

Jarq-japan Agricultural Research Quarterly 农林科学-农业综合

CiteScore

1.00

自引率

25.00%

发文量

审稿时长

>36 weeks

期刊介绍： The Japan Agricultural Research Quarterly (JARQ) is a publication of the Japan International Research Center for Agricultural Sciences (JIRCAS), which provides readers overseas with the latest information on key achievements and developments in agricultural research in Japan, with the expectation that this information would contribute to the agricultural development of countries in tropical and subtropical regions.