Y. Murata, Satomi Murata-Mizukami, E. Kitagawa, H. Iwahashi, K. Takamizawa
{"title":"The evaluation of environmental waters using yeast DNA microarray","authors":"Y. Murata, Satomi Murata-Mizukami, E. Kitagawa, H. Iwahashi, K. Takamizawa","doi":"10.1273/CBIJ.6.29","DOIUrl":null,"url":null,"abstract":"We propose a new method for the evaluation of environmental water by using DNA microarray technology. Twenty-one types of environmental waters were sampled from incineration processes, some factories, and various soils. We performed a comprehensive analysis by DNA microarray, and attempted to classify the environmental water samples by hierarchical cluster analysis. These water samples were classified into clusters from A to F together with chemicals and physical stress conditions. The water sample that grouped into cluster A caused protein denaturation and oxidative stress, but not mutagenesis. The water samples that grouped into cluster B caused protein denaturation. The water samples that grouped into cluster C caused mutagenesis, protein denaturation, and cell wall damage. The water samples that grouped into cluster D caused mutagenesis. The water samples that grouped into cluster E caused protein denaturation and oxidative stress. The water samples that grouped into cluster F caused oxidative stress. Consequently, the potential influences of environmental water could be estimated by hierarchical cluster analysis.","PeriodicalId":40659,"journal":{"name":"Chem-Bio Informatics Journal","volume":"38 1","pages":"29-46"},"PeriodicalIF":0.4000,"publicationDate":"2006-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chem-Bio Informatics Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1273/CBIJ.6.29","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 2
Abstract
We propose a new method for the evaluation of environmental water by using DNA microarray technology. Twenty-one types of environmental waters were sampled from incineration processes, some factories, and various soils. We performed a comprehensive analysis by DNA microarray, and attempted to classify the environmental water samples by hierarchical cluster analysis. These water samples were classified into clusters from A to F together with chemicals and physical stress conditions. The water sample that grouped into cluster A caused protein denaturation and oxidative stress, but not mutagenesis. The water samples that grouped into cluster B caused protein denaturation. The water samples that grouped into cluster C caused mutagenesis, protein denaturation, and cell wall damage. The water samples that grouped into cluster D caused mutagenesis. The water samples that grouped into cluster E caused protein denaturation and oxidative stress. The water samples that grouped into cluster F caused oxidative stress. Consequently, the potential influences of environmental water could be estimated by hierarchical cluster analysis.