Many tasks make light work: Learning to localise medical anomalies from multiple synthetic tasks

Matthew Baugh, Jeremy Tan, Johanna P. Muller, Mischa Dombrowski, James Batten, Bernhard Kainz
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Abstract

There is a growing interest in single-class modelling and out-of-distribution detection as fully supervised machine learning models cannot reliably identify classes not included in their training. The long tail of infinitely many out-of-distribution classes in real-world scenarios, e.g., for screening, triage, and quality control, means that it is often necessary to train single-class models that represent an expected feature distribution, e.g., from only strictly healthy volunteer data. Conventional supervised machine learning would require the collection of datasets that contain enough samples of all possible diseases in every imaging modality, which is not realistic. Self-supervised learning methods with synthetic anomalies are currently amongst the most promising approaches, alongside generative auto-encoders that analyse the residual reconstruction error. However, all methods suffer from a lack of structured validation, which makes calibration for deployment difficult and dataset-dependant. Our method alleviates this by making use of multiple visually-distinct synthetic anomaly learning tasks for both training and validation. This enables more robust training and generalisation. With our approach we can readily outperform state-of-the-art methods, which we demonstrate on exemplars in brain MRI and chest X-rays. Code is available at https://github.com/matt-baugh/many-tasks-make-light-work .
许多任务都很容易完成:学习从多个合成任务中定位医学异常
由于完全监督的机器学习模型不能可靠地识别未包含在其训练中的类,因此对单类建模和分布外检测的兴趣越来越大。在现实场景中,无限多个分布外类的长尾,例如用于筛选、分类和质量控制,意味着通常需要训练代表预期特征分布的单类模型,例如,仅从严格健康的志愿者数据中进行训练。传统的监督式机器学习需要收集包含每种成像模式中所有可能疾病的足够样本的数据集,这是不现实的。具有合成异常的自监督学习方法是目前最有前途的方法之一,此外还有分析残差重建误差的生成式自编码器。然而,所有的方法都缺乏结构化的验证,这使得部署的校准变得困难并且依赖于数据集。我们的方法通过在训练和验证中使用多个视觉上不同的合成异常学习任务来缓解这一问题。这使得更健壮的训练和泛化成为可能。通过我们的方法,我们可以很容易地超越最先进的方法,我们在脑MRI和胸部x光片上展示了这些方法。代码可从https://github.com/matt-baugh/many-tasks-make-light-work获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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