PHYLOGENETIC ANALYSIS OF SHEEP POX AND GOAT POX VIRUS STRAINS IN SAUDI ARABIA

IF 0.6 4区生物学 Q3 AGRICULTURE, MULTIDISCIPLINARY

Journal of Animal and Plant Sciences Pub Date : 2020-01-01 DOI:10.36899/japs.2020.3.0069

I. El-Sabagh, A. Al-Ali, M. Salem, Hussein A. Al-Wsaibei, Abdallah M. Al-Butayan, F. Housawi

{"title":"PHYLOGENETIC ANALYSIS OF SHEEP POX AND GOAT POX VIRUS STRAINS IN SAUDI ARABIA","authors":"I. El-Sabagh, A. Al-Ali, M. Salem, Hussein A. Al-Wsaibei, Abdallah M. Al-Butayan, F. Housawi","doi":"10.36899/japs.2020.3.0069","DOIUrl":null,"url":null,"abstract":"Sheep pox virus (SPPV) and goat pox virus (GTPV) are classified as causing notifiable viral diseases. They belong to the genus Capripoxvirus (CaPV) along with the lumpy skin disease virus (LSDV). CaPVs are mainly host-specific, but there are frequent cross-species infections. Six strains of CaPVs were identified in outbreaks of sheep pox and goat pox in Saudi Arabia between 2013 and 2017. We investigated the sequencing features and phylogenetic analyses of the P32, PRO30 and GPCR genes of the detected SPPVs and GTPV to expose their genetic relationship. Sequence analysis revealed that the percentage of nucleotide identity of P32, PRO30 and GPCR ranged from 94% to 99%, 93% to100% and 90% to 99%, respectively, with other worldwide isolates of CaPVs. The three constructed phylogenetic trees classified the six detected CaPVs into five SPPVs and one GTPV. This study is the first to investigate the genetic relatedness among SPPVs and GTPVs based on full-nucleotide sequences of the P32, PRO30 and GPCR genes. Multiple genetic sequencing analyses and alignments will greatly improve the accuracy of the diagnosis, epidemiologic knowledge and control of CaPV diseases in Saudi Arabia.","PeriodicalId":14924,"journal":{"name":"Journal of Animal and Plant Sciences","volume":"1 1","pages":"586-594"},"PeriodicalIF":0.6000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Animal and Plant Sciences","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.36899/japs.2020.3.0069","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"AGRICULTURE, MULTIDISCIPLINARY","Score":null,"Total":0}

引用次数: 0

Abstract

Sheep pox virus (SPPV) and goat pox virus (GTPV) are classified as causing notifiable viral diseases. They belong to the genus Capripoxvirus (CaPV) along with the lumpy skin disease virus (LSDV). CaPVs are mainly host-specific, but there are frequent cross-species infections. Six strains of CaPVs were identified in outbreaks of sheep pox and goat pox in Saudi Arabia between 2013 and 2017. We investigated the sequencing features and phylogenetic analyses of the P32, PRO30 and GPCR genes of the detected SPPVs and GTPV to expose their genetic relationship. Sequence analysis revealed that the percentage of nucleotide identity of P32, PRO30 and GPCR ranged from 94% to 99%, 93% to100% and 90% to 99%, respectively, with other worldwide isolates of CaPVs. The three constructed phylogenetic trees classified the six detected CaPVs into five SPPVs and one GTPV. This study is the first to investigate the genetic relatedness among SPPVs and GTPVs based on full-nucleotide sequences of the P32, PRO30 and GPCR genes. Multiple genetic sequencing analyses and alignments will greatly improve the accuracy of the diagnosis, epidemiologic knowledge and control of CaPV diseases in Saudi Arabia.

查看原文本刊更多论文

沙特阿拉伯绵羊痘和山羊痘病毒株的系统发育分析

羊痘病毒(SPPV)和山羊痘病毒(GTPV)被归类为引起应通报的病毒性疾病。它们与结节性皮肤病病毒(LSDV)一起属于卡波病毒(CaPV)属。capv主要是宿主特异性的，但也有频繁的跨物种感染。2013年至2017年期间，在沙特阿拉伯暴发的绵羊痘和山羊痘中发现了6株capv。我们对检测到的sppv和GTPV的P32、PRO30和GPCR基因的测序特征和系统发育分析进行了研究，以揭示它们的遗传关系。序列分析表明，该分离株与世界上其他capv分离株的核苷酸同源性分别为94% ~ 99%、93% ~ 100%和90% ~ 99%。3个构建的系统发育树将6个检测到的capv分为5个sppv和1个GTPV。本研究首次基于P32、PRO30和GPCR基因的全核苷酸序列研究sppv和GTPVs之间的遗传相关性。多种基因测序分析和比对将大大提高沙特阿拉伯CaPV疾病的诊断、流行病学知识和控制的准确性。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

求助全文

约1分钟内获得全文求助全文

来源期刊

Journal of Animal and Plant Sciences Multiple-

CiteScore

1.50

自引率

0.00%

发文量

128

审稿时长

6 months

期刊介绍： The Journal of Animal and Plant Sciences (JAPS) is a bi-monthly publication and is being published regularly since 1991 by the Pakistan Agricultural Scientists Forum (PAS FORUM). It publishes original research papers, review, extension/clinical articles on all aspects of animal (including fisheries/wildlife) and plant sciences, agricultural economics, rural sociology and other related subjects. The journal is read, abstracted and indexed by the abstracting/indexing agencies of international repute.