Empowering Team Science Across the Translational Spectrum with the UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE)

J. Cimino, Wayne H. Liang, Jelai Wang, Dongmei Sun, J. D. Osborne, Amy Y. Wang, S. L. Bridges, Matt C. Wyatt, J. Chen
{"title":"Empowering Team Science Across the Translational Spectrum with the UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE)","authors":"J. Cimino, Wayne H. Liang, Jelai Wang, Dongmei Sun, J. D. Osborne, Amy Y. Wang, S. L. Bridges, Matt C. Wyatt, J. Chen","doi":"10.1109/IRI49571.2020.00035","DOIUrl":null,"url":null,"abstract":"In response to a need for diverse computing support for translational science teams, the Informatics Institute at the University of Alabama at Birmingham (UAB) has developed a prototype platform called UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE). This platform provides project management functionality, high-volume data storage, access to clinical data, processing of data through custom pipelines, and high-performance computing in an environment that is compliant with privacy regulations. The project was designed and developed with the help of four biomedical sciences teams, each with their own -omics data, clinical data, and research questions. This paper describes U-BRITE’s architecture (accessible at https://ubrite.org/) and the experience of the members of four teams who were its initial users. Our experience provides useful guidance for future data reuse and an open science model of collaborative biomedical research.","PeriodicalId":93159,"journal":{"name":"2020 IEEE 21st International Conference on Information Reuse and Integration for Data Science : IRI 2020 : proceedings : virtual conference, 11-13 August 2020. IEEE International Conference on Information Reuse and Integration (21st : 2...","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2020 IEEE 21st International Conference on Information Reuse and Integration for Data Science : IRI 2020 : proceedings : virtual conference, 11-13 August 2020. IEEE International Conference on Information Reuse and Integration (21st : 2...","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/IRI49571.2020.00035","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

In response to a need for diverse computing support for translational science teams, the Informatics Institute at the University of Alabama at Birmingham (UAB) has developed a prototype platform called UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE). This platform provides project management functionality, high-volume data storage, access to clinical data, processing of data through custom pipelines, and high-performance computing in an environment that is compliant with privacy regulations. The project was designed and developed with the help of four biomedical sciences teams, each with their own -omics data, clinical data, and research questions. This paper describes U-BRITE’s architecture (accessible at https://ubrite.org/) and the experience of the members of four teams who were its initial users. Our experience provides useful guidance for future data reuse and an open science model of collaborative biomedical research.
通过UAB生物医学研究基础设施技术增强(U-BRITE),增强整个转化谱的团队科学能力
为了满足转化科学团队对多样化计算支持的需求,阿拉巴马大学伯明翰分校(UAB)信息学研究所开发了一个原型平台,称为UAB生物医学研究基础设施技术增强(U-BRITE)。该平台在符合隐私法规的环境中提供项目管理功能、大容量数据存储、临床数据访问、通过定制管道处理数据以及高性能计算。该项目是在四个生物医学科学团队的帮助下设计和开发的,每个团队都有自己的组学数据、临床数据和研究问题。本文描述了U-BRITE的体系结构(可在https://ubrite.org/访问)以及作为其初始用户的四个团队成员的经验。我们的经验为未来的数据重用和协作生物医学研究的开放科学模式提供了有用的指导。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
文献相关原料
公司名称 产品信息 采购帮参考价格
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信