The potential of dispersion-corrected density functional theory calculations for distinguishing between salts and cocrystals

M. Hušák, Simona Šajbanová, J. Klimeš, A. Jegorov
{"title":"The potential of dispersion-corrected density functional theory calculations for distinguishing between salts and cocrystals","authors":"M. Hušák, Simona Šajbanová, J. Klimeš, A. Jegorov","doi":"10.1107/s2052520622008344","DOIUrl":null,"url":null,"abstract":"Validation of a method for distinguishing between salts and cocrystals based on dispersion-corrected density functional theory is presented. Existing related works (van de Streek & Neumann, 2010; LeBlanc et al., 2018) indicate that this approach is problematic and leads to incorrect results in multiple situations. The method suggested here is based on the geometry optimization of an artificially constructed wrong structure (hydrogen atom placed in salt position near the potential acceptor for cocrystals and vice versa cocrystal position with hydrogen atom placed near the potential donor of the salts). The verification of the method is based on comparison of the results with an experimentally confirmed correct hydrogen position. Calculations were performed on 173 selected structures of salts and 96 cocrystals with ΔpKa\n in the critical 〈−1, 4〉 range. The range was chosen to test the method on the most problematic structures. When the artificial wrong model did not converge to the correct one (salt to cocrystal and vice versa), it was tested whether the correct model converged to the correct one in addition. The results confirmed that the most widely used functional (PBE) tends to generate false salt results. All salts converged to the salt from cocrystal initial models. Sixteen cocrystals showed local energy minima for both the salt and cocrystal states. Eighteen cocrystals always converged to salt. Rules were identified under which the results can be considered reliable: when a cocrystal starting model converges to cocrystal, the structure is certainly cocrystal. When both the cocrystal and salt models converge to salt for a long hydrogen-bond (longer than 2.613 Å) the structure is most likely salt. For short hydrogen bonds it is not possible to distinguished reliably between salt and cocrystal using the dispersion-corrected PBE functional. Additional calculations were performed with more advanced functionals for 18 problematic structures detected in the screening as well as for four more mentioned in the literature. The results show that the rSCAN functional (Bartók & Yates, 2019) improves the agreement with the experiment. Further improvement was observed by using hybrid functionals (PBE0, PBE50), which were tested on structures that gave incorrect results with rSCAN. The described method for distinguishing salts from cocrystals can be useful for enhancing the information given by structure solutions from powder, the verification of structure solutions from single crystals and studies related to crystal structure prediction.","PeriodicalId":7080,"journal":{"name":"Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials","volume":"19 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1107/s2052520622008344","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Validation of a method for distinguishing between salts and cocrystals based on dispersion-corrected density functional theory is presented. Existing related works (van de Streek & Neumann, 2010; LeBlanc et al., 2018) indicate that this approach is problematic and leads to incorrect results in multiple situations. The method suggested here is based on the geometry optimization of an artificially constructed wrong structure (hydrogen atom placed in salt position near the potential acceptor for cocrystals and vice versa cocrystal position with hydrogen atom placed near the potential donor of the salts). The verification of the method is based on comparison of the results with an experimentally confirmed correct hydrogen position. Calculations were performed on 173 selected structures of salts and 96 cocrystals with ΔpKa in the critical 〈−1, 4〉 range. The range was chosen to test the method on the most problematic structures. When the artificial wrong model did not converge to the correct one (salt to cocrystal and vice versa), it was tested whether the correct model converged to the correct one in addition. The results confirmed that the most widely used functional (PBE) tends to generate false salt results. All salts converged to the salt from cocrystal initial models. Sixteen cocrystals showed local energy minima for both the salt and cocrystal states. Eighteen cocrystals always converged to salt. Rules were identified under which the results can be considered reliable: when a cocrystal starting model converges to cocrystal, the structure is certainly cocrystal. When both the cocrystal and salt models converge to salt for a long hydrogen-bond (longer than 2.613 Å) the structure is most likely salt. For short hydrogen bonds it is not possible to distinguished reliably between salt and cocrystal using the dispersion-corrected PBE functional. Additional calculations were performed with more advanced functionals for 18 problematic structures detected in the screening as well as for four more mentioned in the literature. The results show that the rSCAN functional (Bartók & Yates, 2019) improves the agreement with the experiment. Further improvement was observed by using hybrid functionals (PBE0, PBE50), which were tested on structures that gave incorrect results with rSCAN. The described method for distinguishing salts from cocrystals can be useful for enhancing the information given by structure solutions from powder, the verification of structure solutions from single crystals and studies related to crystal structure prediction.
色散校正密度泛函理论计算区分盐和共晶的潜力
提出了一种基于色散校正密度泛函理论区分盐和共晶的方法。现有相关作品(van de Streek & Neumann, 2010;LeBlanc等人,2018)表明这种方法是有问题的,在多种情况下会导致不正确的结果。本文提出的方法是基于人为构造的错误结构的几何优化(将氢原子置于盐位,靠近盐的潜在受体,反之亦然,将氢原子置于盐的潜在供体附近的共晶位置)。通过与实验证实的正确氢位置的比较,验证了该方法的正确性。计算了173种盐和96种共晶的结构,ΔpKa在临界< - 1,4 >范围内。选择该范围是为了在最有问题的结构上测试该方法。当人工错误模型没有收敛到正确模型(盐到共晶,反之亦然)时,再测试正确模型是否收敛到正确模型。结果证实,最广泛使用的功能(PBE)倾向于产生假盐结果。所有的盐都收敛于共晶初始模型的盐。16个共晶在盐态和共晶态均表现出局域能量最小值。18个共晶总是会聚成盐。确定了结果可靠的规则:当共晶起始模型收敛于共晶时,结构肯定是共晶。当共晶模型和盐模型都收敛为长氢键(大于2.613 Å)的盐时,结构最可能是盐。对于短氢键,不可能使用色散校正的PBE功能可靠地区分盐和共晶。对筛选中检测到的18个问题结构以及文献中提到的另外4个问题结构进行了更高级的功能计算。结果表明,rSCAN函数(Bartók & Yates, 2019)提高了与实验的一致性。通过使用混合功能(PBE0, PBE50)观察到进一步的改善,这些功能在rSCAN给出错误结果的结构上进行了测试。所描述的区分盐和共晶的方法可用于增强粉末结构溶液给出的信息、单晶结构溶液的验证以及与晶体结构预测相关的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信