An internal transcribed spacer 2 gene fragment, as a suitable phylogenetic marker in Hyalomma and Rhipicephalus (Acari: Rhipicephalinae) species

Z. Telmadarraiy, M. Nasrabadi, M. Sedaghat, A. Hosseini-Chegeni, R. Hosseini, S. Hashemi-Aghdam, Sahereh Gholami
{"title":"An internal transcribed spacer 2 gene fragment, as a suitable phylogenetic marker in Hyalomma and Rhipicephalus (Acari: Rhipicephalinae) species","authors":"Z. Telmadarraiy, M. Nasrabadi, M. Sedaghat, A. Hosseini-Chegeni, R. Hosseini, S. Hashemi-Aghdam, Sahereh Gholami","doi":"10.22067/ijab.v12i2.49415","DOIUrl":null,"url":null,"abstract":"Hyalomma and Rhipicephalus (Acari: Ixodidae: Rhipicephalinae) are the most important ectoparasites and biological vector of pathogen agents. The taxonomy of some Hyalomma and Rhipicephalus species is more debatable. The traditional taxonomy of ticks have been revolutionized using polymerase chain reaction. The specificity, efficiency and accuracy of PCR is highly dependent on the oligonucleotide primers. In this study, five primers designed for amplification of a fragment ITS2 so-called TAH-1, TAH-2, TRH (for Hyalomma) and TAH-3, TAH-4 (for Rhipicephalus). Successfully, 24 and 29 ITS2 sample was sequenced using these primers. As well as, an ITS2 phylogenetic tree were constructed using BEAST basis on the Bayesian Inference (BI) method. The most Hyalomma and Rhipicephalus species well differentiated using ITS2 fragment since the designed primer fail to amplify gene target in few cases.","PeriodicalId":14532,"journal":{"name":"Iranian Journal of Animal Biosystematics","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2016-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Iranian Journal of Animal Biosystematics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.22067/ijab.v12i2.49415","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

Abstract

Hyalomma and Rhipicephalus (Acari: Ixodidae: Rhipicephalinae) are the most important ectoparasites and biological vector of pathogen agents. The taxonomy of some Hyalomma and Rhipicephalus species is more debatable. The traditional taxonomy of ticks have been revolutionized using polymerase chain reaction. The specificity, efficiency and accuracy of PCR is highly dependent on the oligonucleotide primers. In this study, five primers designed for amplification of a fragment ITS2 so-called TAH-1, TAH-2, TRH (for Hyalomma) and TAH-3, TAH-4 (for Rhipicephalus). Successfully, 24 and 29 ITS2 sample was sequenced using these primers. As well as, an ITS2 phylogenetic tree were constructed using BEAST basis on the Bayesian Inference (BI) method. The most Hyalomma and Rhipicephalus species well differentiated using ITS2 fragment since the designed primer fail to amplify gene target in few cases.
一个内部转录的间隔2基因片段,作为一个合适的系统发育标记在透明螨和棘头螨(蜱螨目:棘头螨科)种
透明螨和鼻头螨(蜱螨亚纲:伊蚊科:鼻头螨科)是最重要的体外寄生虫和病原生物媒介。一些透明瘤和鼻头属物种的分类更有争议。利用聚合酶链反应,蜱虫的传统分类已经发生了革命性的变化。PCR的特异性、效率和准确性高度依赖于寡核苷酸引物。本研究设计了5种引物,分别用于扩增ITS2片段TAH-1、TAH-2、TRH(用于透明瘤)和TAH-3、TAH-4(用于鼻头虫)。利用这些引物成功对24和29份ITS2样品进行了测序。基于贝叶斯推理(BI)方法,利用BEAST构建了ITS2系统发育树。由于设计的引物在少数情况下不能扩增基因靶点,因此大多数Hyalomma和Rhipicephalus物种使用ITS2片段分化良好。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信