{"title":"Validating the use of non-invasively sourced DNA for population genetic studies using pedigree data","authors":"Faye Wedrowicz, J. Mosse, Wendy Wright, F. Hogan","doi":"10.5194/WE-17-9-2017","DOIUrl":null,"url":null,"abstract":"Abstract. Non-invasive genetic sampling has provided valuable ecological data for many species – data which may have been unobtainable using invasive sampling methods. However, DNA obtained non-invasively may be prone to increased levels of amplification failure and genotyping error. Utilizing genotype data from 32 pedigreed koalas, this study aimed to validate the reliability of final consensus genotypes obtained using DNA isolated from koala scats. Pedigree analysis, duplicate genotyping, analysis of mismatched loci and tests for null alleles were used to look for evidence of errors. All genetically confirmed parent–offspring relationships were found to follow Mendelian rules of inheritance. Duplicate genotypes matched in all cases and there was no evidence of null alleles. Related individuals always had different 12-marker genotypes having a minimum of three unique loci (in one full sibling pair), a mode of seven unique loci and a maximum of 11 unique loci. This study demonstrates the capacity of DNA recovered from koala scats to provide reliable genotypes that can unequivocally discriminate individuals and infer parentage, provided data are missing from no more than two loci. Validating data obtained using non-invasive sampling is an important step, allowing potential problems to be identified at an early stage.","PeriodicalId":54320,"journal":{"name":"Web Ecology","volume":"14 1","pages":"9-18"},"PeriodicalIF":2.3000,"publicationDate":"2017-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Web Ecology","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.5194/WE-17-9-2017","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 4
Abstract
Abstract. Non-invasive genetic sampling has provided valuable ecological data for many species – data which may have been unobtainable using invasive sampling methods. However, DNA obtained non-invasively may be prone to increased levels of amplification failure and genotyping error. Utilizing genotype data from 32 pedigreed koalas, this study aimed to validate the reliability of final consensus genotypes obtained using DNA isolated from koala scats. Pedigree analysis, duplicate genotyping, analysis of mismatched loci and tests for null alleles were used to look for evidence of errors. All genetically confirmed parent–offspring relationships were found to follow Mendelian rules of inheritance. Duplicate genotypes matched in all cases and there was no evidence of null alleles. Related individuals always had different 12-marker genotypes having a minimum of three unique loci (in one full sibling pair), a mode of seven unique loci and a maximum of 11 unique loci. This study demonstrates the capacity of DNA recovered from koala scats to provide reliable genotypes that can unequivocally discriminate individuals and infer parentage, provided data are missing from no more than two loci. Validating data obtained using non-invasive sampling is an important step, allowing potential problems to be identified at an early stage.
Web EcologyAgricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
4.60
自引率
0.00%
发文量
6
审稿时长
17 weeks
期刊介绍:
Web Ecology (WE) is an open-access journal issued by the European Ecological Federation (EEF) representing the ecological societies within Europe and associated members. Its special value is to serve as a publication forum for national ecological societies that do not maintain their own society journal. Web Ecology publishes papers from all fields of ecology without any geographic restriction. It is a forum to communicate results of experimental, theoretical, and descriptive studies of general interest to an international audience. Original contributions, short communications, and reviews on ecological research on all kinds of organisms and ecosystems are welcome as well as papers that express emerging ideas and concepts with a sound scientific background.