Poster: Planewave-Based First-Principles MD Calculation on 80,000-node K-Computer

A. Kuroda, K. Minami, T. Yamasaki, J. Nara, J. Koga, T. Uda, T. Ohno
{"title":"Poster: Planewave-Based First-Principles MD Calculation on 80,000-node K-Computer","authors":"A. Kuroda, K. Minami, T. Yamasaki, J. Nara, J. Koga, T. Uda, T. Ohno","doi":"10.1109/SC.Companion.2012.281","DOIUrl":null,"url":null,"abstract":"We show the efficiency of a first-principles electronic structure calculation code, PHASE on the massive-parallel super computer, K, which has 80,000 nodes. This code is based on plane-wave basis set, thus FFT routines are included. We succeeded in parallelization of FFT routines needed in our code by localizing each FFT calculation in small number of nodes, resulting in decreasing communication time required for FFT calculation. We also introduce multi-axis parallelization for bands and plane waves and then PHASE shows very high parallel efficiency. By using this code, we have investigated the structural stability of screw dislocations in silicon carbide, which has attracted much attention due to the semiconductor industry importance.","PeriodicalId":6346,"journal":{"name":"2012 SC Companion: High Performance Computing, Networking Storage and Analysis","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2012-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2012 SC Companion: High Performance Computing, Networking Storage and Analysis","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/SC.Companion.2012.281","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

We show the efficiency of a first-principles electronic structure calculation code, PHASE on the massive-parallel super computer, K, which has 80,000 nodes. This code is based on plane-wave basis set, thus FFT routines are included. We succeeded in parallelization of FFT routines needed in our code by localizing each FFT calculation in small number of nodes, resulting in decreasing communication time required for FFT calculation. We also introduce multi-axis parallelization for bands and plane waves and then PHASE shows very high parallel efficiency. By using this code, we have investigated the structural stability of screw dislocations in silicon carbide, which has attracted much attention due to the semiconductor industry importance.
海报:基于planewave的8万节点k型计算机第一性原理MD计算
我们展示了第一原理电子结构计算代码PHASE在大规模并行超级计算机K上的效率,K有80,000个节点。此代码基于平面波基集,因此包含FFT例程。通过将每个FFT计算定位在少量节点上,我们成功地将代码中所需的FFT例程并行化,从而减少了FFT计算所需的通信时间。我们还引入了波段和平面波的多轴并行化,然后相位显示出很高的并行效率。利用这一程序,我们研究了碳化硅中螺旋位错的结构稳定性,这一问题在半导体工业中具有重要的意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信