Automated Composition of Scientific Workflows in Mass Spectrometry-Based Proteomics

Anna-Lena Lamprecht, Magnus Palmblad, J. Ison, V. Schwämmle
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Abstract

Numerous software utilities operating on mass spectrometry (MS) data are described in the literature that provide specific operations as building blocks for the assembly of purposespecific workflows. Working out which tools and combinations are applicable or optimal is often hard: insufficient annotation of tool functions and interfaces impedes finding viable tool combinations, and potentially compatible tools may not, in practice, operate together. Thus researchers face difficulties in selecting practical and effective data analysis pipelines for a specific experimental design.
基于质谱的蛋白质组学科学工作流程的自动组成
文献中描述了许多在质谱(MS)数据上操作的软件实用程序,它们提供了作为特定目的工作流组装的构建块的特定操作。确定哪些工具和组合是适用的或最优的通常是困难的:工具功能和接口的注释不足阻碍了找到可行的工具组合,并且潜在的兼容工具在实践中可能不能一起操作。因此,研究人员在为特定的实验设计选择实用有效的数据分析管道时面临困难。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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