{"title":"Discrete gradients for computational Bayesian inference","authors":"S. Pathiraja, S. Reich","doi":"10.3934/jcd.2019019","DOIUrl":null,"url":null,"abstract":"In this paper, we exploit the gradient flow structure of continuous-time formulations of Bayesian inference in terms of their numerical time-stepping. We focus on two particular examples, namely, the continuous-time ensemble Kalman-Bucy filter and a particle discretisation of the Fokker-Planck equation associated to Brownian dynamics. Both formulations can lead to stiff differential equations which require special numerical methods for their efficient numerical implementation. We compare discrete gradient methods to alternative semi-implicit and other iterative implementations of the underlying Bayesian inference problems.","PeriodicalId":37526,"journal":{"name":"Journal of Computational Dynamics","volume":"78 1","pages":""},"PeriodicalIF":1.0000,"publicationDate":"2019-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"18","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Dynamics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3934/jcd.2019019","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Engineering","Score":null,"Total":0}
引用次数: 18
Abstract
In this paper, we exploit the gradient flow structure of continuous-time formulations of Bayesian inference in terms of their numerical time-stepping. We focus on two particular examples, namely, the continuous-time ensemble Kalman-Bucy filter and a particle discretisation of the Fokker-Planck equation associated to Brownian dynamics. Both formulations can lead to stiff differential equations which require special numerical methods for their efficient numerical implementation. We compare discrete gradient methods to alternative semi-implicit and other iterative implementations of the underlying Bayesian inference problems.
期刊介绍:
JCD is focused on the intersection of computation with deterministic and stochastic dynamics. The mission of the journal is to publish papers that explore new computational methods for analyzing dynamic problems or use novel dynamical methods to improve computation. The subject matter of JCD includes both fundamental mathematical contributions and applications to problems from science and engineering. A non-exhaustive list of topics includes * Computation of phase-space structures and bifurcations * Multi-time-scale methods * Structure-preserving integration * Nonlinear and stochastic model reduction * Set-valued numerical techniques * Network and distributed dynamics JCD includes both original research and survey papers that give a detailed and illuminating treatment of an important area of current interest. The editorial board of JCD consists of world-leading researchers from mathematics, engineering, and science, all of whom are experts in both computational methods and the theory of dynamical systems.