{"title":"tlrmvnmvt: Computing High-Dimensional Multivariate Normal and Student- t Probabilities with Low-Rank Methods in R","authors":"Jian Cao, M. Genton, D. Keyes, G. Turkiyyah","doi":"10.18637/jss.v101.i04","DOIUrl":null,"url":null,"abstract":"This paper introduces the usage and performance of the R package tlrmvnmvt, aimed at computing high-dimensional multivariate normal and Student-t probabilities. The package implements the tile-low-rank methods with block reordering and the separationof-variable methods with univariate reordering. The performance is compared with two other state-of-the-art R packages, namely the mvtnorm and the TruncatedNormal packages. Our package has the best scalability and is likely to be the only option in thousands of dimensions. However, for applications with high accuracy requirements, the TruncatedNormal package is more suitable. As an application example, we show that the excursion sets of a latent Gaussian random field can be computed with the tlrmvnmvt package without any model approximation and hence, the accuracy of the produced excursion sets is improved.","PeriodicalId":17237,"journal":{"name":"Journal of Statistical Software","volume":"188 1","pages":""},"PeriodicalIF":5.4000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Statistical Software","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.18637/jss.v101.i04","RegionNum":2,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 6
Abstract
This paper introduces the usage and performance of the R package tlrmvnmvt, aimed at computing high-dimensional multivariate normal and Student-t probabilities. The package implements the tile-low-rank methods with block reordering and the separationof-variable methods with univariate reordering. The performance is compared with two other state-of-the-art R packages, namely the mvtnorm and the TruncatedNormal packages. Our package has the best scalability and is likely to be the only option in thousands of dimensions. However, for applications with high accuracy requirements, the TruncatedNormal package is more suitable. As an application example, we show that the excursion sets of a latent Gaussian random field can be computed with the tlrmvnmvt package without any model approximation and hence, the accuracy of the produced excursion sets is improved.
期刊介绍:
The Journal of Statistical Software (JSS) publishes open-source software and corresponding reproducible articles discussing all aspects of the design, implementation, documentation, application, evaluation, comparison, maintainance and distribution of software dedicated to improvement of state-of-the-art in statistical computing in all areas of empirical research. Open-source code and articles are jointly reviewed and published in this journal and should be accessible to a broad community of practitioners, teachers, and researchers in the field of statistics.