The first C(O)NHP(O)-based phosphoric triamide structure with an N‒H···π hydrogen bonding: A combination of X-ray crystallography and theoretical study to evaluate the strength of hydrogen bonds

M. Taherzadeh, M. Pourayoubi, R. Afzali, M. Nečas
{"title":"The first C(O)NHP(O)-based phosphoric triamide structure with an N‒H···π hydrogen bonding: A combination of X-ray crystallography and theoretical study to evaluate the strength of hydrogen bonds","authors":"M. Taherzadeh, M. Pourayoubi, R. Afzali, M. Nečas","doi":"10.1080/10426507.2017.1295960","DOIUrl":null,"url":null,"abstract":"GRAPHICAL ABSTRACT ABSTRACT The hydrogen bond pattern of N-(4-methoxybenzoyl)-N′,N″-bis(4-methylbenzyl)-phosphoric triamide, C24H28N3O3P, (I), was investigated. In the crystal structure, the molecules are aggregated through NCP―H···O═P and NP―H···O═C hydrogen bonds in a one-dimensional arrangement parallel to the c axis (NCP is the nitrogen atom in the C(O)NHP(O) segment and NP stands for the two other nitrogen atoms bonded to the P atom). There is also a novel NP‒H···π hydrogen bond in the crystal which extends the aggregation of the molecules to a two-dimensional array parallel to the bc plane. A Cambridge Structural Database (CSD, version 5.37, Feb 2016) analysis shows that the N―H···π hydrogen bond was not observed in any of 156 [RC(O)NH]P(O)[NR1R2]2 (R1 ≠ H, R2 = H or ≠ H) phosphoric triamide structures reported so far. The theoretical calculations at the B3LYP/6-311G** level of theory (DFT, AIM, and NBO) were performed to evaluate the strengths of NCP―H···O═P, NP―H···O═C and NP―H···π hydrogen bonds, considering two-aggregate molecular assemblies containing these hydrogen bonds. The calculations on the title compound suggest that the intermolecular NCP―H···O═P hydrogen bond is stronger than NP―H···O═C and NP―H···π interactions. The hydrogen bond strength was investigated by NBO, topological analysis, geometry calculation, Hirshfeld surface analysis and experimental spectroscopic results, which are in agreement with each other.","PeriodicalId":20043,"journal":{"name":"Phosphorus Sulfur and Silicon and The Related Elements","volume":"202 1","pages":"936 - 944"},"PeriodicalIF":0.0000,"publicationDate":"2017-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Phosphorus Sulfur and Silicon and The Related Elements","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1080/10426507.2017.1295960","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 3

Abstract

GRAPHICAL ABSTRACT ABSTRACT The hydrogen bond pattern of N-(4-methoxybenzoyl)-N′,N″-bis(4-methylbenzyl)-phosphoric triamide, C24H28N3O3P, (I), was investigated. In the crystal structure, the molecules are aggregated through NCP―H···O═P and NP―H···O═C hydrogen bonds in a one-dimensional arrangement parallel to the c axis (NCP is the nitrogen atom in the C(O)NHP(O) segment and NP stands for the two other nitrogen atoms bonded to the P atom). There is also a novel NP‒H···π hydrogen bond in the crystal which extends the aggregation of the molecules to a two-dimensional array parallel to the bc plane. A Cambridge Structural Database (CSD, version 5.37, Feb 2016) analysis shows that the N―H···π hydrogen bond was not observed in any of 156 [RC(O)NH]P(O)[NR1R2]2 (R1 ≠ H, R2 = H or ≠ H) phosphoric triamide structures reported so far. The theoretical calculations at the B3LYP/6-311G** level of theory (DFT, AIM, and NBO) were performed to evaluate the strengths of NCP―H···O═P, NP―H···O═C and NP―H···π hydrogen bonds, considering two-aggregate molecular assemblies containing these hydrogen bonds. The calculations on the title compound suggest that the intermolecular NCP―H···O═P hydrogen bond is stronger than NP―H···O═C and NP―H···π interactions. The hydrogen bond strength was investigated by NBO, topological analysis, geometry calculation, Hirshfeld surface analysis and experimental spectroscopic results, which are in agreement with each other.
第一个基于C(O)NHP(O)的磷酸三酰胺结构与N-H···π氢键:结合x射线晶体学和理论研究来评价氢键的强度
摘要研究了N-(4-甲氧基苯甲酰)-N′,N″-双(4-甲基苄基)-磷酸三酰胺C24H28N3O3P (I)的氢键模式。在晶体结构中,分子通过NCP - h··O = P和NP - h··O = C氢键以平行于C轴的一维排列方式聚集(NCP是C(O)NHP(O)段中的氮原子,NP是与P原子成键的另外两个氮原子)。晶体中还存在一种新颖的NP-H···π氢键,将分子的聚集扩展到平行于bc平面的二维阵列。剑桥结构数据库(CSD, version 5.37, 2016年2月)分析表明,在迄今报道的156个[RC(O)NH]P(O)[NR1R2]2 (R1≠H, R2 = H或≠H)磷酸三酰胺结构中均未观察到N-H···π氢键。在B3LYP/6-311G**理论水平(DFT、AIM和NBO)上进行理论计算,评估NCP-H··O = P、NP-H··O = C和NP-H··π氢键的强度,考虑含有这些氢键的双聚集体分子组合。对标题化合物的计算表明,分子间的NCP-H··O = P氢键比NP-H··O = C和NP-H··π的相互作用更强。通过NBO、拓扑分析、几何计算、Hirshfeld表面分析和实验光谱学分析对其氢键强度进行了研究,结果吻合较好。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信