Accelerating GPU-based Machine Learning in Python using MPI Library: A Case Study with MVAPICH2-GDR

Abstract

The growth of big data applications during the last decade has led to a surge in the deployment and popularity of machine learning (ML) libraries. On the other hand, the high performance offered by GPUs makes them well suited for ML problems. To take advantage of GPU performance for ML, NVIDIA has recently developed the cuML library. cuML is the GPU counterpart of Scikit-learn, and provides similar Pythonic interfaces to Scikit-learn while hiding the complexities of writing GPU compute kernels directly using CUDA. To support execution of ML workloads on Multi-Node Multi- GPU (MNMG) systems, the cuML library exploits the NVIDIA Collective Communications Library (NCCL) as a backend for collective communications between processes. On the other hand, MPI is a de facto standard for communication in HPC systems. Among various MPI libraries, MVAPICH2-GDR is the pioneer in optimizing GPU communication.This paper explores various aspects and challenges of providing MPI-based communication support for GPU-accelerated cuML applications. More specifically, it proposes a Python API to take advantage of MPI-based communications for cuML applications. It also gives an in-depth analysis, characterization, and benchmarking of the cuML algorithms such as K-Means, Nearest Neighbors, Random Forest, and tSVD. Moreover, it provides a comprehensive performance evaluation and profiling study for MPI-based versus NCCL-based communication for these algorithms. The evaluation results show that the proposed MPI-based communication approach achieves up to 1.6x, 1.25x, 1.25x, and 1.36x speedup for K-Means, Nearest Neighbors, Linear Regression, and tSVD, respectively on up to 32 GPUs.