Aya Nader Salama, M. A. Mohamed, Hanan M. Amer, Mohamed Maher Ata
{"title":"An efficient quantification of COVID-19 in chest CT images with improved semantic segmentation using U-Net deep structure","authors":"Aya Nader Salama, M. A. Mohamed, Hanan M. Amer, Mohamed Maher Ata","doi":"10.1002/ima.22930","DOIUrl":null,"url":null,"abstract":"The worldwide spread of the coronavirus (COVID‐19) outbreak has proven devastating to public health. The severity of pneumonia relies on a rapid and accurate diagnosis of COVID‐19 in CT images. Accordingly, a computed tomography (CT) scan is an excellent screening tool for detecting COVID‐19. This paper proposes a deep learning‐based strategy for recognizing and segmenting a COVID‐19 lesion from chest CT images, which would introduce an accurate computer aided decision criteria for the physicians about the severity rate of the patients. Two main stages have been proposed for detecting COVID‐19; first, a convolutional neural network (CNN) deep structure recognizes and classifies COVID‐19 from CT images. Second, a U‐Net deep structure segments the COVID‐19 regions in a semantic manner. The proposed system is trained and evaluated on three different CT datasets for COVID‐19, two of which are used to illustrate the system's segmentation performance and the other is to demonstrate the system's classification ability. Experiment results reveal that the proposed CNN can achieve classification accuracy greater than 0.99, and the proposed U‐Net model outperforms the state‐of‐the‐art in segmentation with an IOU greater than 0.92.","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"33 6","pages":"1882-1901"},"PeriodicalIF":3.0000,"publicationDate":"2023-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.22930","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
Abstract
The worldwide spread of the coronavirus (COVID‐19) outbreak has proven devastating to public health. The severity of pneumonia relies on a rapid and accurate diagnosis of COVID‐19 in CT images. Accordingly, a computed tomography (CT) scan is an excellent screening tool for detecting COVID‐19. This paper proposes a deep learning‐based strategy for recognizing and segmenting a COVID‐19 lesion from chest CT images, which would introduce an accurate computer aided decision criteria for the physicians about the severity rate of the patients. Two main stages have been proposed for detecting COVID‐19; first, a convolutional neural network (CNN) deep structure recognizes and classifies COVID‐19 from CT images. Second, a U‐Net deep structure segments the COVID‐19 regions in a semantic manner. The proposed system is trained and evaluated on three different CT datasets for COVID‐19, two of which are used to illustrate the system's segmentation performance and the other is to demonstrate the system's classification ability. Experiment results reveal that the proposed CNN can achieve classification accuracy greater than 0.99, and the proposed U‐Net model outperforms the state‐of‐the‐art in segmentation with an IOU greater than 0.92.
期刊介绍:
The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals.
IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging.
The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered.
The scope of the journal includes, but is not limited to, the following in the context of biomedical research:
Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.;
Neuromodulation and brain stimulation techniques such as TMS and tDCS;
Software and hardware for imaging, especially related to human and animal health;
Image segmentation in normal and clinical populations;
Pattern analysis and classification using machine learning techniques;
Computational modeling and analysis;
Brain connectivity and connectomics;
Systems-level characterization of brain function;
Neural networks and neurorobotics;
Computer vision, based on human/animal physiology;
Brain-computer interface (BCI) technology;
Big data, databasing and data mining.