Metagenomic study of the tomato rhizosphere soil microbiome: current state and prospect

IF 0.9 Q4 GEOSCIENCES, MULTIDISCIPLINARY
Af Adedayo, S. B. Romdhane, O. Babalola
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引用次数: 2

Abstract

Plant microbiota has a variety of impacts on the plant. Some are beneficial, while some are pathogenic. This study discusses the general metagenomics procedures in processing plant-related metagenomes and focuses on the tomato plants' rhizosphere species. Metagenomics, associated with eventual DNA, is isolated from environmental samples and thus permits absolute microbial population identification. Meanwhile, the genetic content of the DNA sample obtained allows the functional capability identification and biochemical procedure of many microorganisms. This review reveals the recent utilization and application of the potential of Next-Generation Sequencing (NGS) in agriculture. It involves plant-associated microbiota, the factors driving their diversity, and plant metagenome to tackle current challenges experienced in food security. This review provides the newest methods for rapidly identifying the microbial communities inhabiting the rhizosphere soil of tomato plants.
番茄根际土壤微生物组的宏基因组研究:现状与展望
植物微生物群对植物有多种影响。有些是有益的,有些是致病的。本研究讨论了处理植物相关宏基因组的一般宏基因组程序,并着重于番茄植物根际物种。与最终DNA相关的宏基因组学从环境样本中分离出来,从而允许绝对微生物种群鉴定。同时,获得的DNA样本的遗传含量允许许多微生物的功能能力鉴定和生化程序。本文综述了新一代测序技术在农业中的应用前景。它涉及植物相关微生物群、推动其多样性的因素以及植物宏基因组,以应对当前粮食安全面临的挑战。本文综述了快速鉴定番茄根际土壤微生物群落的最新方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
AIMS Geosciences
AIMS Geosciences GEOSCIENCES, MULTIDISCIPLINARY-
自引率
7.70%
发文量
31
审稿时长
8 weeks
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