Role of Dispersion Attraction in Differential Geometry Based Nonpolar Solvation Models

Q2 Mathematics
Zhan Chen
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引用次数: 2

Abstract

Abstract Differential geometry (DG) based solvation models have shown their great success in solvation analysis by avoiding the use of ad hoc surface definitions, coupling the polar and nonpolar free energies, and generating solvent-solute boundary in a physically self-consistent fashion. Parameter optimization is a key factor for their accuracy, predictive ability of solvation free energies, and other applications. Recently, a series of efforts have been made to improve the parameterization of these new implicit solvent models. In thiswork, we aim at studying the role of dispersion attraction in the parameterization of our DG based solvation models. To this end, we first investigate the necessity of van derWaals (vdW) dispersion interactions in the model and then carry out systematic parameterization for the model in the absence of electrostatic interactions. In particular, we explore how the changes in Lennard-Jones (L-J) potential expression, its decomposition scheme, and choices of some fixed parameter values affect the optimal values of other parameters as well as the overall modeling error. Our study on nonpolar solvation analysis offers insights into the parameterization of nonpolar components for the full DG based models by eliminating uncertainties from the electrostatic polar component. Therefore, it can be regarded as a step towards better parameterization for the full DG based model.
色散吸引在基于微分几何的非极性溶剂化模型中的作用
基于微分几何(DG)的溶剂化模型通过避免使用特殊的表面定义,耦合极性和非极性自由能,并以物理自一致的方式生成溶剂-溶质边界,在溶剂化分析中取得了巨大的成功。参数优化是其准确性、溶剂化自由能预测能力和其他应用的关键因素。近年来,人们对这些新的隐式溶剂模型的参数化进行了一系列的改进。在这项工作中,我们的目的是研究分散吸引力在我们的基于DG的溶剂化模型的参数化中的作用。为此,我们首先研究了范德华(vdW)色散相互作用在模型中的必要性,然后对没有静电相互作用的模型进行了系统的参数化。特别是,我们探讨了Lennard-Jones (L-J)势表达式的变化及其分解方案,以及一些固定参数值的选择如何影响其他参数的最优值以及整体建模误差。我们对非极性溶剂化分析的研究通过消除静电极性组分的不确定性,为基于全DG的模型的非极性组分的参数化提供了见解。因此,对于基于全DG的模型,这可以看作是向更好的参数化迈进了一步。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computational and Mathematical Biophysics
Computational and Mathematical Biophysics Mathematics-Mathematical Physics
CiteScore
2.50
自引率
0.00%
发文量
8
审稿时长
30 weeks
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