Utilization of efficient gradient and Hessian computations in the force field optimization process of molecular simulations

M. Hülsmann, Sonja Kopp, M. Huber, D. Reith
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引用次数: 3

Abstract

Computer simulations of chemical systems, especially systems of condensed matter, are highly important for both scientific and industrial applications. Thereby, molecular interactions are modeled on a microscopic level in order to study their impact on macroscopic phenomena. To be capable of predicting physical properties quantitatively, accurate molecular models are indispensable. Molecular interactions are described mathematically by force fields, which have to be parameterized. Recently, an automated gradient-based optimization procedure was published by the authors based on the minimization of a loss function between simulated and experimental physical properties. The applicability of gradient-based procedures is not trivial at all because of two reasons: firstly, simulation data are affected by statistical noise, and secondly, the molecular simulations required for the loss function evaluations are extremely time-consuming. Within the optimization process, gradients and Hessians were approximated by finite differences so that additional simulations for the respective modified parameter sets were required. Hence, a more efficient approach to computing gradients and Hessians is presented in this work. The method developed here is based on directional instead of partial derivatives. It is compared with the classical computations with respect to computation time. Firstly, molecular simulations are replaced by fit functions that define a functional dependence between specific physical observables and force field parameters. The goal of these simulated simulations is to assess the new methodology without much computational effort. Secondly, it is applied to real molecular simulations of the three chemical substances phosgene, methanol and ethylene oxide. It is shown that up to 75% of the simulations can be avoided using the new algorithm.
高效梯度和黑森计算在分子模拟力场优化过程中的应用
化学系统的计算机模拟,特别是凝聚态系统的计算机模拟,对于科学和工业应用都是非常重要的。因此,分子相互作用在微观水平上建模,以研究它们对宏观现象的影响。为了能够定量地预测物理性质,精确的分子模型是必不可少的。分子间的相互作用用数学上的力场来描述,而力场必须被参数化。最近,作者发表了一种基于最小化模拟和实验物理性质之间损失函数的自动梯度优化方法。基于梯度的方法的适用性并不简单,原因有二:首先,模拟数据受到统计噪声的影响,其次,损失函数计算所需的分子模拟非常耗时。在优化过程中,梯度和Hessians通过有限差分近似,因此需要对各自修改后的参数集进行额外的模拟。因此,本文提出了一种更有效的梯度和黑森系数计算方法。这里开发的方法是基于方向而不是偏导数。在计算时间方面与经典计算方法进行了比较。首先,分子模拟被拟合函数取代,拟合函数定义了特定物理观测值与力场参数之间的函数依赖关系。这些模拟的目标是在没有太多计算工作的情况下评估新方法。其次,将其应用于光气、甲醇和环氧乙烷三种化学物质的真实分子模拟。结果表明,采用新算法可以避免高达75%的仿真。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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