Atomistic neural network representations for chemical dynamics simulations of molecular, condensed phase, and interfacial systems: Efficiency, representability, and generalization

IF 16.8 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Yaolong Zhang, Qidong Lin, Bin Jiang
{"title":"Atomistic neural network representations for chemical dynamics simulations of molecular, condensed phase, and interfacial systems: Efficiency, representability, and generalization","authors":"Yaolong Zhang,&nbsp;Qidong Lin,&nbsp;Bin Jiang","doi":"10.1002/wcms.1645","DOIUrl":null,"url":null,"abstract":"<p>Machine learning techniques have been widely applied in many fields of chemistry, physics, biology, and materials science. One of the most fruitful applications is machine learning of the complicated multidimensional function of potential energy or related electronic properties from discrete quantum chemical data. In particular, substantial efforts have been dedicated to developing various atomistic neural network (AtNN) representations, which refer to a family of methods expressing the targeted physical quantity as a sum of atomic components represented by atomic NNs. This class of approaches not only fully preserves the physical symmetry of the system but also scales linearly with respect to the size of a system, enabling accurate and efficient chemical dynamics and spectroscopic simulations in complicated systems and even a number of variably sized systems across the phases. In this review, we discuss different strategies in developing highly efficient and representable AtNN potentials, and in generalizing these scalar AtNN models to learn vectorial and tensorial quantities with the correct rotational equivariance. We also review active learning algorithms to generate practical AtNN models and present selected examples of AtNN applications in gas-surface systems to demonstrate their capabilities of accurately representing both molecular systems and condensed phase systems. We conclude this review by pointing out remaining challenges for the further development of more reliable, transferable, and scalable AtNN representations in more application scenarios.</p><p>This article is categorized under:\n </p>","PeriodicalId":236,"journal":{"name":"Wiley Interdisciplinary Reviews: Computational Molecular Science","volume":"13 3","pages":""},"PeriodicalIF":16.8000,"publicationDate":"2022-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"10","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Wiley Interdisciplinary Reviews: Computational Molecular Science","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/wcms.1645","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 10

Abstract

Machine learning techniques have been widely applied in many fields of chemistry, physics, biology, and materials science. One of the most fruitful applications is machine learning of the complicated multidimensional function of potential energy or related electronic properties from discrete quantum chemical data. In particular, substantial efforts have been dedicated to developing various atomistic neural network (AtNN) representations, which refer to a family of methods expressing the targeted physical quantity as a sum of atomic components represented by atomic NNs. This class of approaches not only fully preserves the physical symmetry of the system but also scales linearly with respect to the size of a system, enabling accurate and efficient chemical dynamics and spectroscopic simulations in complicated systems and even a number of variably sized systems across the phases. In this review, we discuss different strategies in developing highly efficient and representable AtNN potentials, and in generalizing these scalar AtNN models to learn vectorial and tensorial quantities with the correct rotational equivariance. We also review active learning algorithms to generate practical AtNN models and present selected examples of AtNN applications in gas-surface systems to demonstrate their capabilities of accurately representing both molecular systems and condensed phase systems. We conclude this review by pointing out remaining challenges for the further development of more reliable, transferable, and scalable AtNN representations in more application scenarios.

This article is categorized under:

Abstract Image

分子、凝聚相和界面系统化学动力学模拟的原子神经网络表征:效率、可表征性和泛化
机器学习技术已经广泛应用于化学、物理、生物和材料科学的许多领域。最富有成效的应用之一是从离散量子化学数据中对势能或相关电子特性的复杂多维函数进行机器学习。特别是,大量的努力致力于开发各种原子神经网络(AtNN)表示,它指的是一系列方法,将目标物理量表示为原子nn表示的原子组成部分的总和。这类方法不仅完全保留了系统的物理对称性,而且与系统的大小呈线性关系,可以在复杂系统甚至是一些不同大小的系统中进行准确有效的化学动力学和光谱模拟。在这篇综述中,我们讨论了开发高效和可表示的AtNN势的不同策略,以及推广这些标量AtNN模型以学习具有正确旋转等方差的向量量和张量。我们还回顾了主动学习算法来生成实用的AtNN模型,并给出了AtNN在气表面系统中的应用示例,以展示它们准确表示分子系统和凝聚态系统的能力。最后,我们指出了在更多应用场景中进一步开发更可靠、可转移和可扩展的AtNN表示所面临的挑战。本文分类如下:
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Wiley Interdisciplinary Reviews: Computational Molecular Science
Wiley Interdisciplinary Reviews: Computational Molecular Science CHEMISTRY, MULTIDISCIPLINARY-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
28.90
自引率
1.80%
发文量
52
审稿时长
6-12 weeks
期刊介绍: Computational molecular sciences harness the power of rigorous chemical and physical theories, employing computer-based modeling, specialized hardware, software development, algorithm design, and database management to explore and illuminate every facet of molecular sciences. These interdisciplinary approaches form a bridge between chemistry, biology, and materials sciences, establishing connections with adjacent application-driven fields in both chemistry and biology. WIREs Computational Molecular Science stands as a platform to comprehensively review and spotlight research from these dynamic and interconnected fields.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信