Principal-stretch-based constitutive neural networks autonomously discover a subclass of Ogden models for human brain tissue

Q3 Engineering
Sarah R. St. Pierre, Kevin Linka, Ellen Kuhl
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引用次数: 0

Abstract

The soft tissue of the brain deforms in response to external stimuli, which can lead to traumatic brain injury. Constitutive models relate the stress in the brain to its deformation and accurate constitutive modeling is critical in finite element simulations to estimate injury risk. Traditionally, researchers first choose a constitutive model and then fit the model parameters to tension, compression, or shear experiments. In contrast, constitutive artificial neural networks enable automated model discovery without having to choose a specific model before learning the model parameters. Here we reverse engineer a constitutive artificial neural network that uses the principal stretches, raised to a wide range of exponential powers, as activation functions. Upon training, the network autonomously discovers a subclass of models with multiple Ogden terms that outperform popular constitutive models including the neo Hooke, Blatz Ko, and Mooney Rivlin models. While invariant-based networks fail to capture the pronounced tension–compression asymmetry of brain tissue, our principal-stretch-based network can simultaneously explain tension, compression, and shear data for the cortex, basal ganglia, corona radiata, and corpus callosum. Without fixing the number of terms a priori, our model self-selects the best subset of terms out of more than a million possible combinations, while simultaneously discovering the best model parameters and best experiment to train itself. Eliminating user-guided model selection has the potential to induce a paradigm shift in soft tissue modeling and democratize brain injury simulations. Our source code, data, and examples are available at https://github.com/LivingMatterLab/CANN.

Statement of Significance: Understanding the constitutive response of the brain is critical to estimate brain injury risk, design protective devices, and predict surgical intervention. The current gold standard in constitutive modeling, first choosing a constitutive model and then fitting its parameters to data, is largely biased by user experience and personal preference. Constitutive artificial neural networks eliminate the need for user-guided model selection and enable automated model discovery. Here we reverse-engineer a constitutive artificial neural network with custom-designed activation functions from principal stretches raised to a wide range of exponential powers. When trained with data from human gray and white matter tissue, our network autonomously discovers a subclass of models with multiple Ogden terms that outperform popular constitutive models including the neo Hooke, Blatz Ko, and Mooney Rivlin models. While these classical invariant-based networks fail to capture the pronounced tension-compression asymmetry of brain tissue, our discovered principal-stretch-based models can simultaneously explain tension, compression, and shear data from the human cortex, basal ganglia, corona radiata, and corpus callosum. Without fixing the number of model terms a priori, our network self-selects the best subset of terms out of more than a million possible combinations, while simultaneously discovering the best model parameters, for example, shear moduli of 1.47kPa, 0.68kPa, 0.69kPa, and 0.29kPa for these four brain regions. Our findings are significant in that they eliminate user-guided model selection and have the potential to make brain modeling more accessible to a wide group of scientists with diverse training and backgrounds towards the ultimate goal to democratize human brain simulations.

基于主拉伸的本构神经网络自主发现人脑组织的奥格登模型的一个子类
大脑的软组织在外界刺激下会变形,这可能导致创伤性脑损伤。本构模型将大脑的应力与大脑的变形联系起来,准确的本构模型在有限元模拟中评估损伤风险是至关重要的。传统上,研究人员首先选择一个本构模型,然后将模型参数拟合到拉伸、压缩或剪切实验中。相比之下,本构人工神经网络能够自动发现模型,而无需在学习模型参数之前选择特定的模型。在这里,我们逆向工程一个本构人工神经网络,它使用主拉伸,提高到一个大范围的指数幂,作为激活函数。经过训练,网络自动发现具有多个Ogden术语的模型子类,其性能优于流行的本构模型,包括neo Hooke, Blatz Ko和Mooney Rivlin模型。虽然基于不变量的神经网络无法捕捉脑组织明显的张力-压缩不对称性,但我们的基于主拉伸的神经网络可以同时解释皮层、基底节区、辐射冠和胼胝体的张力、压缩和剪切数据。在不固定先验项数的情况下,我们的模型从100多万个可能的组合中自行选择最佳的项子集,同时发现最佳的模型参数和最佳的实验来训练自己。消除用户引导的模型选择有可能导致软组织建模的范式转变,并使脑损伤模拟大众化。我们的源代码、数据和示例可在https://github.com/LivingMatterLab/CANN.Statement上获得:了解大脑的本构反应对于估计脑损伤风险、设计保护装置和预测手术干预至关重要。当前本构建模的黄金标准是首先选择一个本构模型,然后将其参数拟合到数据中,这在很大程度上受到用户经验和个人偏好的影响。本构人工神经网络消除了用户引导模型选择的需要,并实现了自动模型发现。在这里,我们逆向工程了一个具有自定义设计的激活函数的本构人工神经网络,从主拉伸提升到广泛的指数幂。当使用来自人类灰质和白质组织的数据进行训练时,我们的网络自动发现具有多个奥格登术语的模型子类,其性能优于流行的本构模型,包括neo Hooke, Blatz Ko和Mooney Rivlin模型。虽然这些经典的基于不变量的网络无法捕捉脑组织明显的张力-压缩不对称性,但我们发现的基于主拉伸的模型可以同时解释来自人类皮层、基底神经节、辐射冠和胼胝体的张力、压缩和剪切数据。在不先验地固定模型项的数量的情况下,我们的网络从100多万个可能的组合中自选择最佳的项子集,同时发现最佳的模型参数,例如,这四个大脑区域的剪切模量分别为1.47kPa、0.68kPa、0.69kPa和0.29kPa。我们的发现意义重大,因为它们消除了用户导向的模型选择,并有可能使具有不同训练和背景的广泛科学家群体更容易获得大脑建模,从而实现人类大脑模拟民主化的最终目标。
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来源期刊
Brain multiphysics
Brain multiphysics Physics and Astronomy (General), Modelling and Simulation, Neuroscience (General), Biomedical Engineering
CiteScore
4.80
自引率
0.00%
发文量
0
审稿时长
68 days
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