CTANet: Confidence-Based Threshold Adaption Network for Semi-Supervised Segmentation of Uterine Regions from MR Images for HIFU Treatment

IF 5.6 4区 医学 Q1 ENGINEERING, BIOMEDICAL
Irbm Pub Date : 2023-06-01 DOI:10.1016/j.irbm.2022.100747
C. Zhang , G. Yang , F. Li , Y. Wen , Y. Yao , H. Shu , A. Simon , J.-L. Dillenseger , J.-L. Coatrieux
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引用次数: 2

Abstract

Objectives

The accurate preoperative segmentation of the uterus and uterine fibroids from magnetic resonance images (MRI) is an essential step for diagnosis and real-time ultrasound guidance during high-intensity focused ultrasound (HIFU) surgery. Conventional supervised methods are effective techniques for image segmentation. Recently, semi-supervised segmentation approaches have been reported in the literature. One popular technique for semi-supervised methods is to use pseudo-labels to artificially annotate unlabeled data. However, many existing pseudo-label generations rely on a fixed threshold used to generate a confidence map, regardless of the proportion of unlabeled and labeled data.

Materials and Methods

To address this issue, we propose a novel semi-supervised framework called Confidence-based Threshold Adaptation Network (CTANet) to improve the quality of pseudo-labels. Specifically, we propose an online pseudo-labels method to automatically adjust the threshold, producing high-confident unlabeled annotations and boosting segmentation accuracy. To further improve the network's generalization to fit the diversity of different patients, we design a novel mixup strategy by regularizing the network on each layer in the decoder part and introducing a consistency regularization loss between the outputs of two sub-networks in CTANet.

Results

We compare our method with several state-of-the-art semi-supervised segmentation methods on the same uterine fibroids dataset containing 297 patients. The performance is evaluated by the Dice similarity coefficient, the precision, and the recall. The results show that our method outperforms other semi-supervised learning methods. Moreover, for the same training set, our method approaches the segmentation performance of a fully supervised U-Net (100% annotated data) but using 4 times less annotated data (25% annotated data, 75% unannotated data).

Conclusion

Experimental results are provided to illustrate the effectiveness of the proposed semi-supervised approach. The proposed method can contribute to multi-class segmentation of uterine regions from MRI for HIFU treatment.

Abstract Image

CTANet:用于HIFU治疗的MR图像子宫区域半监督分割的基于置信度的阈值自适应网络
目的术前从磁共振图像(MRI)中准确分割子宫和子宫肌瘤是高强度聚焦超声(HIFU)手术中诊断和实时超声指导的重要步骤。传统的监督方法是图像分割的有效技术。最近,文献中已经报道了半监督分割方法。半监督方法的一种流行技术是使用伪标签来人为地注释未标记的数据。然而,许多现有的伪标签生成依赖于用于生成置信图的固定阈值,而与未标记和标记数据的比例无关。材料和方法为了解决这个问题,我们提出了一种新的半监督框架,称为基于置信度的阈值自适应网络(CTANet),以提高伪标签的质量。具体来说,我们提出了一种在线伪标签方法来自动调整阈值,产生高置信度的未标记注释,并提高分割精度。为了进一步提高网络的泛化能力以适应不同患者的多样性,我们设计了一种新的混合策略,通过在解码器部分的每一层上正则化网络,并在CTANet中的两个子网络的输出之间引入一致性正则化损失。结果在包含297名患者的同一子宫肌瘤数据集上,我们将我们的方法与几种最先进的半监督分割方法进行了比较。通过Dice相似系数、精度和召回率来评估性能。结果表明,我们的方法优于其他半监督学习方法。此外,对于相同的训练集,我们的方法接近完全监督U-Net(100%注释数据)的分割性能,但使用的注释数据少4倍(25%注释数据,75%未注释数据)。结论实验结果表明了所提出的半监督方法的有效性。所提出的方法有助于从MRI中对子宫区域进行多类别分割,用于HIFU治疗。
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来源期刊
Irbm
Irbm ENGINEERING, BIOMEDICAL-
CiteScore
10.30
自引率
4.20%
发文量
81
审稿时长
57 days
期刊介绍: IRBM is the journal of the AGBM (Alliance for engineering in Biology an Medicine / Alliance pour le génie biologique et médical) and the SFGBM (BioMedical Engineering French Society / Société française de génie biologique médical) and the AFIB (French Association of Biomedical Engineers / Association française des ingénieurs biomédicaux). As a vehicle of information and knowledge in the field of biomedical technologies, IRBM is devoted to fundamental as well as clinical research. Biomedical engineering and use of new technologies are the cornerstones of IRBM, providing authors and users with the latest information. Its six issues per year propose reviews (state-of-the-art and current knowledge), original articles directed at fundamental research and articles focusing on biomedical engineering. All articles are submitted to peer reviewers acting as guarantors for IRBM''s scientific and medical content. The field covered by IRBM includes all the discipline of Biomedical engineering. Thereby, the type of papers published include those that cover the technological and methodological development in: -Physiological and Biological Signal processing (EEG, MEG, ECG…)- Medical Image processing- Biomechanics- Biomaterials- Medical Physics- Biophysics- Physiological and Biological Sensors- Information technologies in healthcare- Disability research- Computational physiology- …
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