F-Box and Leucine-Rich Repeat Protein 7 Is a Prognostic Biomarker and Is Correlated with the Immunosuppressive Microenvironment in Colorectal Cancer.

IF 1.1 4区 生物学 Q4 GENETICS & HEREDITY
Genetic testing and molecular biomarkers Pub Date : 2023-10-01 Epub Date: 2023-10-20 DOI:10.1089/gtmb.2023.0075
Shuai Wang, Xunping Zhao, Shuyuan Zhu, Jiali Xu, Tao Luo
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引用次数: 0

Abstract

Background: Colorectal cancer (CRC) is a common malignancy of the digestive system, but its specific mechanisms of occurrence and development remain incompletely understood. F-Box and leucine-rich repeat protein 7 (FBXL7) is a subunit of the Skp-cullin-F-box ubiquitin ligase, involved in cell cycle regulation, endothelial cell damage, and inflammatory immunological responses. However, the role of FBXL7 in CRC remains unknown. In this study, we investigated the clinical significance and potential mechanism of FBXL7 expression in CRC progression. Methods: We utilized data from The Cancer Genome Atlas (TCGA) and the University of California Santa Cruz Xena (UCSC Xena) database for bioinformatic analyses. Clinical CRC samples were used to confirm FBXL7 expression. Gene set enrichment analysis (GSEA) and various databases, such as TCGA, UCSC Xena, cBioPortal, University of ALabama at Birmingham CANcer data analysis portal, MethSurv, Tumor Immune Estimation Resource (TIMER), TIMER2.0, Tumor-Immune System Interaction Database, and Tumor Immune Dysfunction and Exclusion Database (TIDB), were used to investigate the role of FBXL7 in CRC. Statistical analysis was performed using R (v.3.6.3) or GraphPad Prism 8.0. Results: Our findings revealed the predictive significance of FBXL7 in CRC patients. FBXL7 expression was associated with tumor stage, lymph node stage, pathological stage, perineural invasion, and lymphatic invasion. GSEA analysis identified associations between FBXL7 and extracellular matrix organization, as well as immune-related pathways. Immunological analysis revealed a correlation between high FBXL7 expression and the development of an immunosuppressive microenvironment. Conclusion: Identifying FBXL7 as a novel biomarker for CRC could shed light on the promotion of CRC development by the immune environment.

F-Box和富含亮氨酸重复蛋白7是一种预后生物标志物,与癌症免疫抑制微环境相关。
背景:癌症是一种常见的消化系统恶性肿瘤,但其发生和发展的具体机制尚不清楚。F-Box和富含亮氨酸的重复蛋白7(FBXL7)是Skp-cullin-F-Box泛素连接酶的一个亚基,参与细胞周期调节、内皮细胞损伤和炎症免疫反应。然而,FBXL7在CRC中的作用仍然未知。在本研究中,我们研究了FBXL7在CRC进展中的临床意义和潜在机制。方法:我们利用癌症基因组图谱(TCGA)和加州大学圣克鲁斯Xena(UCSC Xena)数据库的数据进行生物信息学分析。临床CRC样本用于确认FBXL7的表达。基因集富集分析(GSEA)和各种数据库,如TCGA、UCSC Xena、cBioPortal、伯明翰大学癌症数据分析门户、MethSurv、肿瘤免疫评估资源(TIMER)、TIMER2.0、肿瘤免疫系统相互作用数据库和肿瘤免疫功能障碍和排异数据库(TIDB),用于研究FBXL7在CRC中的作用。使用R(v.3.6.3)或GraphPad Prism 8.0进行统计分析。结果:我们的研究结果揭示了FBXL7在CRC患者中的预测意义。FBXL7的表达与肿瘤分期、淋巴结分期、病理分期、神经侵袭和淋巴侵袭有关。GSEA分析确定了FBXL7与细胞外基质组织以及免疫相关途径之间的关联。免疫学分析揭示了FBXL7的高表达与免疫抑制微环境的发展之间的相关性。结论:鉴定FBXL7作为CRC的一种新的生物标志物,可以揭示免疫环境对CRC发生的促进作用。
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来源期刊
CiteScore
2.50
自引率
7.10%
发文量
63
审稿时长
1 months
期刊介绍: Genetic Testing and Molecular Biomarkers is the leading peer-reviewed journal covering all aspects of human genetic testing including molecular biomarkers. The Journal provides a forum for the development of new technology; the application of testing to decision making in an increasingly varied set of clinical situations; ethical, legal, social, and economic aspects of genetic testing; and issues concerning effective genetic counseling. This is the definitive resource for researchers, clinicians, and scientists who develop, perform, and interpret genetic tests and their results. Genetic Testing and Molecular Biomarkers coverage includes: -Diagnosis across the life span- Risk assessment- Carrier detection in individuals, couples, and populations- Novel methods and new instrumentation for genetic testing- Results of molecular, biochemical, and cytogenetic testing- Genetic counseling
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