Nathanaelle Saclier, Louis Duchemin, Lara Konecny-Dupré, Philippe Grison, David Eme, Chloé Martin, Cécile Callou, Tristan Lefébure, Clémentine François, Colin Issartel, Julian J. Lewis, Fabio Stoch, Boris Sket, Sanja Gottstein, Teo Delić, Maja Zagmajster, Michal Grabowski, Dieter Weber, Ana Sofia P. S. Reboleira, Dmitry Palatov, Kaloust Paragamian, Lee R. F. D. Knight, Georges Michel, Francois Lefebvre, Mohammad-Javad Malek Hosseini, Ana I. Camacho, Begoña Gartzia De Bikuña, Amina Taleb, Nouria Belaidi, Raoul P. Tuekam Kayo, Diana Maria Paola Galassi, Oana Teodora Moldovan, Christophe J. Douady, Florian Malard
{"title":"A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database","authors":"Nathanaelle Saclier, Louis Duchemin, Lara Konecny-Dupré, Philippe Grison, David Eme, Chloé Martin, Cécile Callou, Tristan Lefébure, Clémentine François, Colin Issartel, Julian J. Lewis, Fabio Stoch, Boris Sket, Sanja Gottstein, Teo Delić, Maja Zagmajster, Michal Grabowski, Dieter Weber, Ana Sofia P. S. Reboleira, Dmitry Palatov, Kaloust Paragamian, Lee R. F. D. Knight, Georges Michel, Francois Lefebvre, Mohammad-Javad Malek Hosseini, Ana I. Camacho, Begoña Gartzia De Bikuña, Amina Taleb, Nouria Belaidi, Raoul P. Tuekam Kayo, Diana Maria Paola Galassi, Oana Teodora Moldovan, Christophe J. Douady, Florian Malard","doi":"10.1111/1755-0998.13882","DOIUrl":null,"url":null,"abstract":"<p>Transition to novel environments, such as groundwater colonization by surface organisms, provides an excellent research ground to study phenotypic evolution. However, interspecific comparative studies on evolution to groundwater life are few because of the challenge in assembling large ecological and molecular resources for species-rich taxa comprised of surface and subterranean species. Here, we make available to the scientific community an operational set of working tools and resources for the Asellidae, a family of freshwater isopods containing hundreds of surface and subterranean species. First, we release the World Asellidae database (WAD) and its web application, a sustainable and FAIR solution to producing and sharing data and biological material. WAD provides access to thousands of species occurrences, specimens, DNA extracts and DNA sequences with rich metadata ensuring full scientific traceability. Second, we perform a large-scale dated phylogenetic reconstruction of Asellidae to support phylogenetic comparative analyses. Of 424 terminal branches, we identify 34 pairs of surface and subterranean species representing independent replicates of the transition from surface water to groundwater. Third, we exemplify the usefulness of WAD for documenting phenotypic shifts associated with colonization of subterranean habitats. We provide the first phylogenetically controlled evidence that body size of males decreases relative to that of females upon groundwater colonization, suggesting competition for rare receptive females selects for smaller, more agile males in groundwater. By making these tools and resources widely accessible, we open up new opportunities for exploring how phenotypic traits evolve in response to changes in selective pressures and trade-offs during groundwater colonization.</p>","PeriodicalId":211,"journal":{"name":"Molecular Ecology Resources","volume":"24 1","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2023-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular Ecology Resources","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13882","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Transition to novel environments, such as groundwater colonization by surface organisms, provides an excellent research ground to study phenotypic evolution. However, interspecific comparative studies on evolution to groundwater life are few because of the challenge in assembling large ecological and molecular resources for species-rich taxa comprised of surface and subterranean species. Here, we make available to the scientific community an operational set of working tools and resources for the Asellidae, a family of freshwater isopods containing hundreds of surface and subterranean species. First, we release the World Asellidae database (WAD) and its web application, a sustainable and FAIR solution to producing and sharing data and biological material. WAD provides access to thousands of species occurrences, specimens, DNA extracts and DNA sequences with rich metadata ensuring full scientific traceability. Second, we perform a large-scale dated phylogenetic reconstruction of Asellidae to support phylogenetic comparative analyses. Of 424 terminal branches, we identify 34 pairs of surface and subterranean species representing independent replicates of the transition from surface water to groundwater. Third, we exemplify the usefulness of WAD for documenting phenotypic shifts associated with colonization of subterranean habitats. We provide the first phylogenetically controlled evidence that body size of males decreases relative to that of females upon groundwater colonization, suggesting competition for rare receptive females selects for smaller, more agile males in groundwater. By making these tools and resources widely accessible, we open up new opportunities for exploring how phenotypic traits evolve in response to changes in selective pressures and trade-offs during groundwater colonization.
期刊介绍:
Molecular Ecology Resources promotes the creation of comprehensive resources for the scientific community, encompassing computer programs, statistical and molecular advancements, and a diverse array of molecular tools. Serving as a conduit for disseminating these resources, the journal targets a broad audience of researchers in the fields of evolution, ecology, and conservation. Articles in Molecular Ecology Resources are crafted to support investigations tackling significant questions within these disciplines.
In addition to original resource articles, Molecular Ecology Resources features Reviews, Opinions, and Comments relevant to the field. The journal also periodically releases Special Issues focusing on resource development within specific areas.