Zhanguo Xin, Yinping Jiao, Gloria Burow, Chad Hayes, Junping Chen, John Burke, N. Ace Pugh, Doreen Ware
{"title":"Registration of 252 sequenced sorghum mutants as a community reverse genetic resource","authors":"Zhanguo Xin, Yinping Jiao, Gloria Burow, Chad Hayes, Junping Chen, John Burke, N. Ace Pugh, Doreen Ware","doi":"10.1002/plr2.20296","DOIUrl":null,"url":null,"abstract":"<p>Induced mutagenesis is a powerful approach to generate variations that can be used toward the elucidation of gene function and create new traits for crop improvement. We have developed a pedigreed mutant library through chemical mutagenesis with ethyl methanesulfonate (EMS)-treated seed from the sorghum (<i>Sorghum bicolor</i> L. Moench) inbred line BTx623. The mutant library displayed a wide diversity of phenotypes, including potential traits of significant agronomic value. A selection of 252 lines (Reg. no. GS-794–Reg no. GS-1045, PI 701562–PI 701813) were sequenced to an average depth of 16x with paired-end sequencing using Illumina Highseq. This endeavor resulted in the detection and cataloguing of more than 1.8 million canonical EMS-induced mutations (variants). The variants were distributed across the sorghum genome uniformly, with 24,757 genes affected by impactful mutations that may alter the gene function. Mutations in genes of interest can be searched online through SorghumBase (https://www.sorghumbase.org). These sequenced mutants can be ordered through GRIN (https://www.ars-grin.gov/) with no associated fee.</p>","PeriodicalId":16822,"journal":{"name":"Journal of Plant Registrations","volume":"17 3","pages":"599-604"},"PeriodicalIF":0.6000,"publicationDate":"2023-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/plr2.20296","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Plant Registrations","FirstCategoryId":"97","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/plr2.20296","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0
Abstract
Induced mutagenesis is a powerful approach to generate variations that can be used toward the elucidation of gene function and create new traits for crop improvement. We have developed a pedigreed mutant library through chemical mutagenesis with ethyl methanesulfonate (EMS)-treated seed from the sorghum (Sorghum bicolor L. Moench) inbred line BTx623. The mutant library displayed a wide diversity of phenotypes, including potential traits of significant agronomic value. A selection of 252 lines (Reg. no. GS-794–Reg no. GS-1045, PI 701562–PI 701813) were sequenced to an average depth of 16x with paired-end sequencing using Illumina Highseq. This endeavor resulted in the detection and cataloguing of more than 1.8 million canonical EMS-induced mutations (variants). The variants were distributed across the sorghum genome uniformly, with 24,757 genes affected by impactful mutations that may alter the gene function. Mutations in genes of interest can be searched online through SorghumBase (https://www.sorghumbase.org). These sequenced mutants can be ordered through GRIN (https://www.ars-grin.gov/) with no associated fee.
期刊介绍:
The Journal of Plant Registrations is an official publication of the Crop Science Society of America and the premier international venue for plant breeders, geneticists, and genome biologists to publish research describing new and novel plant cultivars, germplasms, parental lines, genetic stocks, and genomic mapping populations. In addition to biomedical, nutritional, and agricultural scientists, the intended audience includes policy makers, humanitarian organizations, and all facets of food, feed, fiber, bioenergy, and shelter industries. The scope of articles includes (1) cultivar, germplasm, parental line, genetic stock, and mapping population registration manuscripts, (2) short manuscripts characterizing accessions held within Plant Germplasm Collection Systems, and (3) descriptions of plant genetic materials that have made a major impact on agricultural security. Registration of plant genetic resources, item (1) above, requires deposit of plant genetic material into the USDA ARS National Plant Germplasm System prior to publication.