Enabling particle applications for exascale computing platforms

IF 2.5 3区 计算机科学 Q2 COMPUTER SCIENCE, HARDWARE & ARCHITECTURE
S. Mniszewski, J. Belak, J. Fattebert, C. Negre, S. Slattery, A. Adedoyin, R. Bird, Choong-Seock Chang, Guangye Chen, S. Ethier, S. Fogerty, Salman Habib, Christoph Junghans, D. Lebrun-Grandié, J. Mohd-Yusof, S. Moore, D. Osei-Kuffuor, S. Plimpton, A. Pope, S. Reeve, L. Ricketson, A. Scheinberg, A. Sharma, M. Wall
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引用次数: 17

Abstract

The Exascale Computing Project (ECP) is invested in co-design to assure that key applications are ready for exascale computing. Within ECP, the Co-design Center for Particle Applications (CoPA) is addressing challenges faced by particle-based applications across four “sub-motifs”: short-range particle–particle interactions (e.g., those which often dominate molecular dynamics (MD) and smoothed particle hydrodynamics (SPH) methods), long-range particle–particle interactions (e.g., electrostatic MD and gravitational N-body), particle-in-cell (PIC) methods, and linear-scaling electronic structure and quantum molecular dynamics (QMD) algorithms. Our crosscutting co-designed technologies fall into two categories: proxy applications (or “apps”) and libraries. Proxy apps are vehicles used to evaluate the viability of incorporating various types of algorithms, data structures, and architecture-specific optimizations and the associated trade-offs; examples include ExaMiniMD, CabanaMD, CabanaPIC, and ExaSP2. Libraries are modular instantiations that multiple applications can utilize or be built upon; CoPA has developed the Cabana particle library, PROGRESS/BML libraries for QMD, and the SWFFT and fftMPI parallel FFT libraries. Success is measured by identifiable “lessons learned” that are translated either directly into parent production application codes or into libraries, with demonstrated performance and/or productivity improvement. The libraries and their use in CoPA’s ECP application partner codes are also addressed.
为百亿亿次计算平台启用粒子应用
Exascale计算项目(ECP)投资于联合设计,以确保关键应用程序为Exascale计算机做好准备。在ECP中,粒子应用联合设计中心(CoPA)正在解决四个“子基序”中基于粒子的应用所面临的挑战:短程粒子-粒子相互作用(例如,那些通常主导分子动力学(MD)和平滑粒子流体动力学(SPH)方法的相互作用),长程粒子-粒子相互作用(例如,静电MD和引力N体)、细胞内粒子(PIC)方法以及线性标度电子结构和量子分子动力学(QMD)算法。我们的横切协同设计技术分为两类:代理应用程序(或“应用程序”)和库。代理应用程序是用于评估结合各种类型的算法、数据结构和架构特定优化以及相关权衡的可行性的工具;示例包括ExaMiniMD、CabanaMD、Cabana PIC和ExaSP2。库是多个应用程序可以利用或构建的模块化实例化;CoPA开发了Cabana粒子库、QMD的PROGRESS/BML库以及SWFT和fftMPI并行FFT库。成功是通过可识别的“经验教训”来衡量的,这些经验教训可以直接转化为父生产应用程序代码或库,并证明性能和/或生产力有所提高。还讨论了库及其在CoPA的ECP应用伙伴代码中的使用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
International Journal of High Performance Computing Applications
International Journal of High Performance Computing Applications 工程技术-计算机:跨学科应用
CiteScore
6.10
自引率
6.50%
发文量
32
审稿时长
>12 weeks
期刊介绍: With ever increasing pressure for health services in all countries to meet rising demands, improve their quality and efficiency, and to be more accountable; the need for rigorous research and policy analysis has never been greater. The Journal of Health Services Research & Policy presents the latest scientific research, insightful overviews and reflections on underlying issues, and innovative, thought provoking contributions from leading academics and policy-makers. It provides ideas and hope for solving dilemmas that confront all countries.
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