How the errors in the process of vegetation analysis in the field and the data processing affect the results of classification (with arctic communities as an example)

Q4 Agricultural and Biological Sciences
N. Matveyeva
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The completeness of species list within these depends on such parameters as time spent working in the field and technique (standard eye assessment at the sample plot (25 or 100 m2), a series of smaller (less than 1 m2) plots as well the researcher’s professionalism. The statement about the need to obtain a complete list of species in each stand seems an axiom, which is not fulfilled in practice. In Taymyr, when describing zonal communities for more than 2 hours, were recorded about 75 % of species, found on a permanent, carefully studied, sample plot of the same association. It is not necessary to comment that eye assessment of both composition and quantitative parameters are far fr om perfect. The same “amount” of species (abundance, cover) can be reflected differently not only by various researchers, but even by one, and not only in different years and areas, but as well in one season depending on such factors as what reléve was before, at what time of day (evening lighting in the Arctic is a serious factor), in what weather, etc. The result is influenced by factors such as the size and shape of a sample plot. The size is obvious: it should be no smaller than minimal area i. e. an area that gives an adequate idea of the composition of the described plot (Barkman, 1958, 1993). For the Arctic, according to the results of special work (Matveyeva, 1998), an area of 25 m2 was recommended for the species richest communities with a complex horizontal structure and 9 m2 for all others. The most frequent, generally accepted shape is a square. The use of another one depends on the community configuration: in narrow, elongated, winding, it must be “adjusted” to the outline of the stand, or it is better to abandon a single large plot in favor of several smaller ones. Location of the sample plot in space: preferably the most central, equidistant from the community boundaries. The smaller size of the community in general or its narrowness is fraught by the effect of visinizm (Barkman, 1958, 1990): the plot and therefore the list will get species of neighboring communities. No less problematic is the eye assessment of the species”amount”. It is generally accepted to evaluate projective cover, since neither to count the number of individuals, nor the determine of the true cover, and even more no biomass, in numerous relevés, is unrealistic. Despite the enormous field experience of Western European phytosociologists during the first half of the last century, who become convinced that it was impossible to determine the projective cover by eye with an accuracy of 1 %, they came to a reasonable decision to use grades. In the practice of classification according to the Brown-Blanquet approach, the 7-grade scale (r, +, 1, 2, 3, 4, 5), periodically slightly modified, became the most widely used (see: Becking, 1957). To our great regret, we gradually began to use individual authors’ scales with larger number of grades — as a result the same numbers in different scales represent different cover in percent. This is more or less acceptable as long as we are talking about one paper. However when a lot of data are collected from different, often geographically remote, areas, and a large number of relevés are put into a single table, the possibility of an error in assessing the species cover is huge. Recently again, researches began to show the projective cover with an accuracy of 1 %, arguing that percent can be converted into grades, but not vice versa. The objection is the same: it is impossible to determine the projective cover by eye with an accuracy of 1 %. Not only that each researcher has his own mistake (before starting work in the field in Taymyr, we checked our estimates more than once: the difference in smaller values always differed by 1–3 %, in higher ones (after 25 %) by 5–10 %); the same person will give a different percentage depending on many reasons. Hence, if it is not specified how the projective cover was assessed (for example, on 100 m2 sample plot on each 1 m2, i.e. 100 squares), then the figures 8 %, 11 %, 19 %, 38 %, 41 %, etc. — are deliberate misrepresentation. An intermediate result of the discussion of field errors: the eye assessment of the composition, the total number of species and their amount depends on such a number of tricks that its accuracy leaves much to be desired. What is the alternative? It is available and repeatedly tested. From personal experience in Taimyr, this is the use of small (from 0.1×0.1 to 0.5×0.5 m) plots on which species identification and estimation of their numbers is incomparably more accurate than on a large test site. Another approaches were: to use a ­graduated piece of metal-wire — a field device for creating a virtual plot in the form of 3 circles (0.1, 0.01, 0.001 m2 in size) for obtaining data in heterogeneous Arctic communities, proposed by Danish phytosociologist T. Böcher (1975); to estimate separately the “amount” and number of species for each element of intra-community mosaic. Always the practice on identifying species on smaller plots gave results 1.5–2 times higher than in the standard relevé, i. e. the species richness of the Arctic communities is underestimated and often very much (up to 30 %). It should also be noted that it is always a great success if specialists in different plant groups work together in the field, for the Arctic in particular these are bryologists and lichenologists: the numbers of species in relevés are always many times higher. All the above facts are the arguments of the evident incomplete list of species under standard field practice. What follows from this? First position is that: 1) the number and set of species in different communities of the same association is always different (“... the number of species grows steadily as the number of relevés increases even in the most homotonous types of vegetation” (Barkman, 1990: p. 1217); 2) the species richness of the association (coenoflora) is many times higher than that of a particular stand. Few examples: in polar desert zone on Bolshevik Isl. in the zonal ass. Deschampsio-Aulacomnietum turgidi Matveyeva 2006 179 species were identified in 18 stands, with 49–84 in each one (70 in average), i.e. 2.5 times less than in the association; for other associations (same place) this ratio is 1.7–2.8 (Matveyeva, 2006); on Taymyr, this indicator varies from 1.0 to 3.4, and there is no connection with either the zonal position or the number of relevés (Matveyeva, 2009). Having in mind the significant differences in species richness of communities and syntaxa, it would be possible to see the unevenness of species distribution in the landscape, which is also indicated by the species spread in constancy classes with a high (up to 40– 50 %) proportion of species of the low (1–20 %) constancy. The question whether this reflects the reality is asked extremely rarely. Greatly possible is that a large number of species with low constancy in syntaxa is a consequence of their oversight in the field. In the data processing such field errors are not taken into account, and in the procedure of syntaxon differentiation one attaches importance to variances in the presence of low-constant (I and II classes) species. The difference in one step fits into the statistical error for any class (even assuming the unbelievable that every species has been recorded in each stand that does not happen in practice). Hence, it is incorrect to consider such weak differences in the species constancy (V–IV, IV–III, III–II, II–I) as essential for choosing selective character species (occur in several syntaxa, but more often in one). Against giving diagnostic value to low-constant species, in particular those with low (r, +) abundance, experts in phytosociology have been warning for a long time (see: Barkman, 1990, 1991). Outside the scope of analysis is also a topic of how many relevés are needed for definition a new syntaxon, as well as on which territory — in one or in several sites. However just this is what gives reason of describing new variants of already known associations in another area wh ere another researcher works with his own errors in obtaining data. An answer to the question of what to do with all this is as follows: no matter how tempting it is to attract indicators of species composition, richness and constancy, for any kinds of assessment and comparisons, they should be used with great care, having in mind the methodological errors in their obtaining. But even if forget about the relevé quality, their table treatment is also not at the highest level (three example are given). In order not to complete the given essay on the subject of how imperfect we are in our attempts not only in understanding, but even in describing nature on such a sad note, here, as an ironic defense, is a quote from the ancient Greek (485–410 BC) philosopher Protagoras: “... about every subject we can say both in two ways and in the opposite way”, which in our practice is often sounds as: “but the author sees it like that”. However if we consider ourselves as people of science, we have to operate with facts, to justify our position by evidence, not by assumptions, guesses, and emotions ... In any comparisons of the species diversity of communities and the use of these data for their classification, it should be keeping in memory th","PeriodicalId":37606,"journal":{"name":"Rastitel''nost'' Rossii","volume":"1 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Rastitel''nost'' Rossii","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.31111/vegrus/2020.38.139","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 0

Abstract

A list of species with an access of their “amount” (number of individuals, true/projective cover, biomass) on a plot of a standard size is the information that is necessary for an objective classification of plant communities, no matter what principles it is based on. Information on species composition, the variation both in their “amount” and constancy in the pool of geobotanical relevés is the basis for their clustering and the delimitation of syntaxonomical units. The only possible documents recording this information are geobotanical relevés, both published in the open press and stored in databases/archives. The completeness of species list within these depends on such parameters as time spent working in the field and technique (standard eye assessment at the sample plot (25 or 100 m2), a series of smaller (less than 1 m2) plots as well the researcher’s professionalism. The statement about the need to obtain a complete list of species in each stand seems an axiom, which is not fulfilled in practice. In Taymyr, when describing zonal communities for more than 2 hours, were recorded about 75 % of species, found on a permanent, carefully studied, sample plot of the same association. It is not necessary to comment that eye assessment of both composition and quantitative parameters are far fr om perfect. The same “amount” of species (abundance, cover) can be reflected differently not only by various researchers, but even by one, and not only in different years and areas, but as well in one season depending on such factors as what reléve was before, at what time of day (evening lighting in the Arctic is a serious factor), in what weather, etc. The result is influenced by factors such as the size and shape of a sample plot. The size is obvious: it should be no smaller than minimal area i. e. an area that gives an adequate idea of the composition of the described plot (Barkman, 1958, 1993). For the Arctic, according to the results of special work (Matveyeva, 1998), an area of 25 m2 was recommended for the species richest communities with a complex horizontal structure and 9 m2 for all others. The most frequent, generally accepted shape is a square. The use of another one depends on the community configuration: in narrow, elongated, winding, it must be “adjusted” to the outline of the stand, or it is better to abandon a single large plot in favor of several smaller ones. Location of the sample plot in space: preferably the most central, equidistant from the community boundaries. The smaller size of the community in general or its narrowness is fraught by the effect of visinizm (Barkman, 1958, 1990): the plot and therefore the list will get species of neighboring communities. No less problematic is the eye assessment of the species”amount”. It is generally accepted to evaluate projective cover, since neither to count the number of individuals, nor the determine of the true cover, and even more no biomass, in numerous relevés, is unrealistic. Despite the enormous field experience of Western European phytosociologists during the first half of the last century, who become convinced that it was impossible to determine the projective cover by eye with an accuracy of 1 %, they came to a reasonable decision to use grades. In the practice of classification according to the Brown-Blanquet approach, the 7-grade scale (r, +, 1, 2, 3, 4, 5), periodically slightly modified, became the most widely used (see: Becking, 1957). To our great regret, we gradually began to use individual authors’ scales with larger number of grades — as a result the same numbers in different scales represent different cover in percent. This is more or less acceptable as long as we are talking about one paper. However when a lot of data are collected from different, often geographically remote, areas, and a large number of relevés are put into a single table, the possibility of an error in assessing the species cover is huge. Recently again, researches began to show the projective cover with an accuracy of 1 %, arguing that percent can be converted into grades, but not vice versa. The objection is the same: it is impossible to determine the projective cover by eye with an accuracy of 1 %. Not only that each researcher has his own mistake (before starting work in the field in Taymyr, we checked our estimates more than once: the difference in smaller values always differed by 1–3 %, in higher ones (after 25 %) by 5–10 %); the same person will give a different percentage depending on many reasons. Hence, if it is not specified how the projective cover was assessed (for example, on 100 m2 sample plot on each 1 m2, i.e. 100 squares), then the figures 8 %, 11 %, 19 %, 38 %, 41 %, etc. — are deliberate misrepresentation. An intermediate result of the discussion of field errors: the eye assessment of the composition, the total number of species and their amount depends on such a number of tricks that its accuracy leaves much to be desired. What is the alternative? It is available and repeatedly tested. From personal experience in Taimyr, this is the use of small (from 0.1×0.1 to 0.5×0.5 m) plots on which species identification and estimation of their numbers is incomparably more accurate than on a large test site. Another approaches were: to use a ­graduated piece of metal-wire — a field device for creating a virtual plot in the form of 3 circles (0.1, 0.01, 0.001 m2 in size) for obtaining data in heterogeneous Arctic communities, proposed by Danish phytosociologist T. Böcher (1975); to estimate separately the “amount” and number of species for each element of intra-community mosaic. Always the practice on identifying species on smaller plots gave results 1.5–2 times higher than in the standard relevé, i. e. the species richness of the Arctic communities is underestimated and often very much (up to 30 %). It should also be noted that it is always a great success if specialists in different plant groups work together in the field, for the Arctic in particular these are bryologists and lichenologists: the numbers of species in relevés are always many times higher. All the above facts are the arguments of the evident incomplete list of species under standard field practice. What follows from this? First position is that: 1) the number and set of species in different communities of the same association is always different (“... the number of species grows steadily as the number of relevés increases even in the most homotonous types of vegetation” (Barkman, 1990: p. 1217); 2) the species richness of the association (coenoflora) is many times higher than that of a particular stand. Few examples: in polar desert zone on Bolshevik Isl. in the zonal ass. Deschampsio-Aulacomnietum turgidi Matveyeva 2006 179 species were identified in 18 stands, with 49–84 in each one (70 in average), i.e. 2.5 times less than in the association; for other associations (same place) this ratio is 1.7–2.8 (Matveyeva, 2006); on Taymyr, this indicator varies from 1.0 to 3.4, and there is no connection with either the zonal position or the number of relevés (Matveyeva, 2009). Having in mind the significant differences in species richness of communities and syntaxa, it would be possible to see the unevenness of species distribution in the landscape, which is also indicated by the species spread in constancy classes with a high (up to 40– 50 %) proportion of species of the low (1–20 %) constancy. The question whether this reflects the reality is asked extremely rarely. Greatly possible is that a large number of species with low constancy in syntaxa is a consequence of their oversight in the field. In the data processing such field errors are not taken into account, and in the procedure of syntaxon differentiation one attaches importance to variances in the presence of low-constant (I and II classes) species. The difference in one step fits into the statistical error for any class (even assuming the unbelievable that every species has been recorded in each stand that does not happen in practice). Hence, it is incorrect to consider such weak differences in the species constancy (V–IV, IV–III, III–II, II–I) as essential for choosing selective character species (occur in several syntaxa, but more often in one). Against giving diagnostic value to low-constant species, in particular those with low (r, +) abundance, experts in phytosociology have been warning for a long time (see: Barkman, 1990, 1991). Outside the scope of analysis is also a topic of how many relevés are needed for definition a new syntaxon, as well as on which territory — in one or in several sites. However just this is what gives reason of describing new variants of already known associations in another area wh ere another researcher works with his own errors in obtaining data. An answer to the question of what to do with all this is as follows: no matter how tempting it is to attract indicators of species composition, richness and constancy, for any kinds of assessment and comparisons, they should be used with great care, having in mind the methodological errors in their obtaining. But even if forget about the relevé quality, their table treatment is also not at the highest level (three example are given). In order not to complete the given essay on the subject of how imperfect we are in our attempts not only in understanding, but even in describing nature on such a sad note, here, as an ironic defense, is a quote from the ancient Greek (485–410 BC) philosopher Protagoras: “... about every subject we can say both in two ways and in the opposite way”, which in our practice is often sounds as: “but the author sees it like that”. However if we consider ourselves as people of science, we have to operate with facts, to justify our position by evidence, not by assumptions, guesses, and emotions ... In any comparisons of the species diversity of communities and the use of these data for their classification, it should be keeping in memory th
野外植被分析和数据处理过程中的误差如何影响分类结果(以北极群落为例)
在标准大小的地块上,可以访问其“数量”(个体数量、真实/投影覆盖率、生物量)的物种列表是对植物群落进行客观分类所必需的信息,无论其基于什么原则,它们在地植物亲缘关系库中的“数量”和恒定性的变化是它们聚类和构造组学单元划界的基础。记录这些信息的唯一可能的文件是地理植物学相关文件,这些文件都在公开媒体上发布,并存储在数据库/档案中。其中物种清单的完整性取决于这些参数,如在实地工作的时间和技术(在样本地块(25或100平方米)进行标准眼睛评估,一系列较小(小于1平方米)的地块,以及研究人员的专业精神。关于需要获得每个林分中物种的完整列表的说法似乎是一条公理,但在实践中并没有得到实现。在Taymir,当描述带状群落超过2个小时时,记录了大约75%的物种,这些物种是在同一协会的永久、仔细研究的样本区上发现的。不需要评论的是,眼睛对成分和定量参数的评估都远远不够完美。同样的物种“数量”(丰度、覆盖率)不仅可以由不同的研究人员来反映,甚至可以由一个人来反映,不仅可以在不同的年份和地区,也可以在一个季节反映,这取决于以前的气候、一天中的时间(北极的夜间照明是一个严重因素)、天气等因素。结果受到诸如样本图的大小和形状等因素的影响。大小是显而易见的:它应该不小于最小面积,即一个对所描述的地块的组成有足够想法的面积(Barkman,19581993)。对于北极,根据特别工作的结果(Matveyeva,1998),建议具有复杂水平结构的物种最丰富的群落面积为25平方米,其他群落面积为9平方米。最常见、最普遍接受的形状是正方形。另一个地块的使用取决于社区配置:在狭窄、细长、蜿蜒的情况下,必须根据看台的轮廓进行“调整”,或者最好放弃一个大地块,而选择几个较小的地块。样本地块在空间中的位置:最好是最中心的,与社区边界等距。总体而言,群落的较小规模或其狭窄程度充满了视觉主义的影响(Barkman,19581990):该地块和因此的列表将获得相邻群落的物种。同样有问题的是对物种“数量”的眼睛评估。评估投影覆盖是普遍接受的,因为无论是计算个体数量,还是确定真实覆盖,甚至在许多相关研究中,没有生物量都是不现实的。尽管西欧植物社会学家在上世纪上半叶有着丰富的实地经验,他们确信不可能用眼睛以1%的准确度确定投影覆盖,但他们还是做出了使用等级的合理决定。在根据Brown-Blanquet方法进行分类的实践中,7级量表(r,+,1,2,3,4,5),经过周期性的轻微修改,成为最广泛使用的量表(见:Becking,1957)。令我们非常遗憾的是,我们逐渐开始使用分数较多的个人作者量表——因此,不同量表中相同的数字代表不同的覆盖率。只要我们谈论的是一篇论文,这或多或少是可以接受的。然而,当从不同的、通常地理位置偏远的地区收集大量数据,并将大量相关数据放在一个表中时,在评估物种覆盖率时出错的可能性很大。最近,研究再次表明投影覆盖的准确率为1%,认为百分比可以转换为等级,但不能反过来。反对意见是一样的:不可能用眼睛以1%的准确度来确定投影覆盖。不仅每个研究人员都有自己的错误(在Taymir开始这一领域的工作之前,我们不止一次地检查了我们的估计:较小值的差异总是1-3%,较高值(25%之后)的差异是5-10%);同一个人会根据多种原因给出不同的百分比。因此,如果没有具体说明如何评估投影覆盖(例如,在每1平方米的100平方米样本图上,即100个正方形),那么8%、11%、19%、38%、41%等数字是故意歪曲的。野外误差讨论的一个中间结果是:对成分、物种总数及其数量的眼睛评估取决于大量的技巧,其准确性还有很多不足之处。 在对群落的物种多样性进行任何比较以及使用这些数据进行分类时,都应该记住
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来源期刊
Rastitel''nost'' Rossii
Rastitel''nost'' Rossii Agricultural and Biological Sciences-Plant Science
CiteScore
1.20
自引率
0.00%
发文量
5
期刊介绍: The scientific journal Rastitel''nost'' Rossii is included in the Scopus database. Publisher country is Russia. The main subject areas of published articles are Ecology, Evolution, Behavior and Systematics, Plant Science, Общая биология.
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