Thermal Response in Cellulose Iβ Based on Molecular Dynamics

Q2 Mathematics
Xuewei Jiang, Yu Chen, Yue Yuan, Lu Zheng
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引用次数: 3

Abstract

Abstract The structural details of cellulose I β were discussed according to molecular dynamics simulations with the GLYCAM-06 force field. The simulation outcomes were in agreement with previous experimental data, including structural parameters and hydrogen bond pattern at 298 K. We found a new conformation of cellulose Iβ existed at the intermediate temperature that is between the low and high temperatures. Partial chain rotations along the backbone direction were found and conformations of hydroxymethyl groups that alternated from tg to either gt or gg were observed when the temperature increased from 298 K to 400 K. In addition, the gg conformation is preferred than gt. For the structure adopted at high temperature of 500 K, major chains were twisted and two chains detached from each plain. In contrast to the observation under intermediate temperature, the population of hydroxymethyl groups in gt exceeded that in gg conformation at high temperature. In addition, three patterns of hydrogen bonding were identified at low, intermediate and high temperatures in the simulations. The provided structural information indicated the transitions occurred around 350 K and 450 K, considered as the transitional temperatures of cellulose Iβ in this work.
基于分子动力学的纤维素Iβ的热响应
摘要利用GLYCAM-06力场进行分子动力学模拟,讨论了纤维素Iβ的结构细节。模拟结果与先前的实验数据一致,包括298K下的结构参数和氢键模式。我们发现纤维素Iβ在介于低温和高温之间的中间温度下存在一种新的构象。当温度从298K增加到400K时,发现了沿主链方向的部分链旋转,并观察到羟甲基从tg到gt或gg交替的构象。此外,gg构象比gt更优选。对于在500K的高温下采用的结构,主链扭曲,每个平面上有两条链分离。与在中等温度下的观察相反,在高温下,gt中的羟甲基基团的数量超过了gg构象中的羟基。此外,在模拟中,在低温、中温和高温下确定了三种氢键模式。所提供的结构信息表明,转变发生在350K和450K左右,在本工作中被认为是纤维素Iβ的转变温度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computational and Mathematical Biophysics
Computational and Mathematical Biophysics Mathematics-Mathematical Physics
CiteScore
2.50
自引率
0.00%
发文量
8
审稿时长
30 weeks
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