{"title":"Revisit of the taxonomic status of Bos genus with special refference to north eastern hilly region of India","authors":"Ningthoujam Neelima Devi , Bishal Dhar , Prasanta Kumar Bera , Yashmin Choudhury , Sankar Kumar Ghosh","doi":"10.1016/j.angen.2022.200143","DOIUrl":null,"url":null,"abstract":"<div><p><span>North-eastern India has diverse Bos genus endemic animals which include Siri (</span><span><em>Bos indicus</em></span>), Yak (<em>Bos grunniens</em><span>) and Mithun (</span><em>Bos frontalis</em><span>). But very little is known about their origin and taxonomic position. Hence, a taxonomic revisit of the genesis needed to confirm their position in the family Bovidae<span><span>. So, the present study focuses on molecular cataloguing through DNA barcoding and </span>phylogenetic relationships. The generated </span></span><em>CO1</em> sequences of <em>Bos indicus, Bos grunniens, and Bos frontalis</em> were analyzed through similarity search, Species delineation approach like K2P Distance, Neighbour-Joining tree and ML approaches to identify their taxonomic position with respect to global published data. The NJ tree revealed cohesive clustering of <em>Bos indicus</em> with the pre-existing sequences of zebu and taurine but distinct from other congeners. The collected specimen of <em>Bos frontalis</em> clustered distinctly from other congeners and failed to cluster with <span><em>Bos gaurus</em><em>,</em></span> which nullifies the previous report of <em>Bos frontalis</em> as a domesticated form of <em>Bos gaurus</em>. Similarly, <span><em>Bison bison</em></span> clustered very closely with <em>Bos grunniens</em> as their nearest neighbour. This observation was confirmed by ML phylogeny. Our findings confirmed the Siri's species status as <em>Bos indicus</em>. Similarly, <em>Bos frontalis</em> is a different species within the genus <em>Bos</em> but not the domesticated form of <em>Bos gaurus</em>. The close clustering of <em>Bos grunniens</em> and <em>Bison bison</em> supported the previous reports, which suggest that the genus <em>Bison</em> should be regarded as a synonym of the genus <em>Bos</em>. Thus, the present study strongly recommends the revisiting of bovine taxonomy.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"27 ","pages":"Article 200143"},"PeriodicalIF":0.0000,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animal Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352406522000203","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
Abstract
North-eastern India has diverse Bos genus endemic animals which include Siri (Bos indicus), Yak (Bos grunniens) and Mithun (Bos frontalis). But very little is known about their origin and taxonomic position. Hence, a taxonomic revisit of the genesis needed to confirm their position in the family Bovidae. So, the present study focuses on molecular cataloguing through DNA barcoding and phylogenetic relationships. The generated CO1 sequences of Bos indicus, Bos grunniens, and Bos frontalis were analyzed through similarity search, Species delineation approach like K2P Distance, Neighbour-Joining tree and ML approaches to identify their taxonomic position with respect to global published data. The NJ tree revealed cohesive clustering of Bos indicus with the pre-existing sequences of zebu and taurine but distinct from other congeners. The collected specimen of Bos frontalis clustered distinctly from other congeners and failed to cluster with Bos gaurus, which nullifies the previous report of Bos frontalis as a domesticated form of Bos gaurus. Similarly, Bison bison clustered very closely with Bos grunniens as their nearest neighbour. This observation was confirmed by ML phylogeny. Our findings confirmed the Siri's species status as Bos indicus. Similarly, Bos frontalis is a different species within the genus Bos but not the domesticated form of Bos gaurus. The close clustering of Bos grunniens and Bison bison supported the previous reports, which suggest that the genus Bison should be regarded as a synonym of the genus Bos. Thus, the present study strongly recommends the revisiting of bovine taxonomy.
Animal GeneAgricultural and Biological Sciences-Insect Science
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0.00%
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16
期刊介绍:
Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.