Machine learning-assisted study of correlation between post-transition-state bifurcation and initial phase information at the ambimodal transition state

IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC
Tatsuhiro Murakami, Yuya Kikuma, Shunichi Ibuki, Naoki Matsumoto, Kanon Ogino, Yu Hashimoto, Toshiyuki Takayanagi
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Abstract

The Diels–Alder cycloaddition of cyclopentadiene and nitroethene, the intramolecular cycloaddition between a diene and triene, and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene involving post-transition-state bifurcation (PTSB) were studied. These cycloaddition reactions were investigated using quasi-classical trajectory (QCT), classical molecular dynamics (MD), ring-polymer molecular dynamics (RPMD) simulations, and supervised machine-learning binary classification techniques. Room-temperature dynamics simulations started from the ambimodal transition state (TS) using the QCT, classical MD, and RPMD methods presented similar dynamics. Binary classification revealed that the initial geometry displacement from the ambimodal TS for the Diels–Alder cycloaddition of cyclopentadiene and nitroethene contributed to the branching dynamics and that the initial momenta for the intramolecular cycloaddition between a diene and triene and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene played a significant role in the bifurcation dynamics.

Abstract Image

机器学习辅助研究了过渡态后分岔与双峰过渡态初始相位信息之间的相关性
研究了环戊二烯与硝基乙烯的Diels-Alder环加成反应、二烯与三烯之间的分子内环加成反应以及2-羟基丙烯与1,3-丁二烯的Diels-Alder环加成反应。这些环加成反应采用准经典轨迹(QCT)、经典分子动力学(MD)、环聚合物分子动力学(RPMD)模拟和监督机器学习二元分类技术进行了研究。从双峰过渡态(TS)出发,采用QCT、经典MD和RPMD方法进行室温动力学模拟,得到了相似的动力学结果。二元分类表明,Diels-Alder环戊二烯与硝基乙烯的双峰式环加成反应的初始几何位移是分支动力学的重要因素,二烯与三烯的分子内环加成反应和2-羟基丙烯与1,3-丁二烯的Diels-Alder环加成反应的初始动量是分支动力学的重要因素。
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来源期刊
CiteScore
3.60
自引率
11.10%
发文量
161
审稿时长
2.3 months
期刊介绍: The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.
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