Crystal Structure of Bis(μ-hydroxo)diiron(III) Complex with Tripodal Ligands Having a Terminal Carboxylate Group

IF 0.1 Q4 CRYSTALLOGRAPHY
Xi Zhang, H. Furutachi, Yuya Ohyama, S. Fujinami, Shigehisa Akine, Masatatsu Suzuki
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引用次数: 0

Abstract

Hydroxoor oxo-bridged non-heme diiron centers with terminal carboxylates are structural motifs found in metalloproteins, such as soluble methane monooxygenase (sMMO) and ribonucleotide reductase (RNR).1–4 Synthetic diiron model complexes with Fe2(OH)2, Fe2(O)(OH), and Fe2(O)2 cores are of particular importance for obtaining fundamental insights into the structural and spectroscopic properties of the active centers in the metalloproteins mentioned above.2–4 Previously, we reported that the crystal structure of a (μ-oxo)(μ-hydroxo)diiron(III) complex, [Fe2(6Me2-BPP)2(O)(OH)] (2),5 with a tetradentate tripodal ligand (6Me2-BPP) having a terminal carboxylate, which was derived from deprotonation of its conjugate acid, [Fe2(6Me2-BPP)2(OH)2]. In this paper, we report on the crystal structure of the bis(μ-hydroxo)diiron(III) complex [Fe2(6Me2BPP)2(OH)2](NO3)1.9553·Br0.0447·8H2O (1) (Fig. 1). A single crystal of [Fe2(6Me2-BPP)2(OH)2](NO3)1.9553·Br0.0447· 8H2O (1) suitable for X-ray crystallography was obtained by the recrystallization of [Fe2(6Me2-BPP)2(OH)2](NO3)2·4.5H2O from water. It was picked up on a hand-made cold copper plate mounted inside a liquid N2 Dewar vessel and mounted on a glass rod at –80°C. X-ray diffraction measurements were made on a Rigaku CCD Mercury diffractometer with graphite monochromated Mo Kα radiation at 123 K. The structure was solved by a direct method (SHELXS 97)6 and expanded using a Fourier technique. The structure was refined by a full-matrix least-squares method by using the SHELXL 20147 (YadokariXG).8 The asymmetric unit contains two very similar molecules that could be nearly related by each other with a translation symmetry in the [0 1 1] direction. This could be interpreted as a structure with a half unit-cell volume. However, the counter anions (NO3, Br –) and crystallizing water molecules are located at different positions that could not be related by a translational symmetry. Also, the diffractions with k + l = odd showed significant intensities (around 1/3 of those with k + l = even). Therefore, we concluded that the structure should have two independent molecules in the asymmetric unit. All nonhydrogen atoms were refined with anisotropic displacement parameters. The hydrogen atoms in the μ-hydroxo groups and water molecules were restrained to ensure reasonable distances (0.84 Å) by applying the default values for O–H DFIX restraints. Other hydrogen atoms were included using a riding model. The crystal data are summarized in Table 1. X-ray crystallography of 1 reveals that the asymmetric unit contains two halves of complex cations, [Fe2(6Me2-BPP)2(OH)2] (molecules A and B), 1.9553 nitrate ions, 0.0447 bromide ion, and eight water molecules. The partial content of the bromide ion appears to be due to the preparation route of the 6Me2BPPH ligand, which was obtained from the reaction of bis(6methyl-2-pyridylmethyl)amine with 3-bromopropionic acid in the presence of triethylamine.5 ORTEP drawing of the complex cation [Fe2(6Me2-BPP)2(OH)2] (molecule A) is shown in Fig. 2. Selected bond distances (Å) and angles (°) are given in Table 2. Only the 2019 © The Japan Society for Analytical Chemistry
具有末端羧酸基团的三足配体的双(μ-羟基)二铁(III)配合物的晶体结构
具有末端羧酸盐的氢氧或氧桥联的非血红素二铁中心是金属蛋白中发现的结构基序,如可溶性甲烷单加氧酶(sMMO)和核糖核苷酸还原酶(RNR)。1-4与Fe2(OH)2、Fe2(O)(OH),和Fe2(O)2核心对于获得对上述金属蛋白中活性中心的结构和光谱性质的基本见解具有特别重要的意义。2-4之前,我们报道了(μ-氧代)(μ-羟基)二铁(III)配合物[Fe2(6Me2 BPP)2(O)(OH)](2)的晶体结构,5与具有末端羧酸盐的四齿三分子配体(6Me2 BPP),其衍生自其共轭酸[Fe2(6Me2 BP)2(OH)2]的去质子化。本文报道了双(μ-羟基)二铁(III)配合物[Fe2(6Me2BPP)2(OH)2](NO3)1.9553·Br0.0447·8H2O(1)的晶体结构(图1)。用[Fe2(6Me2-BPP)2(OH)2](NO3)2·4.5H2O从水中重结晶,得到了一个适合X射线晶体学的[Fe2(6Me2-BPP)2(OH2)2](NO3)1.9553·Br0.0447·8H2O(1)单晶。它是在安装在液态N2杜瓦容器内的手工冷铜板上收集的,并安装在-80°C的玻璃棒上。在Rigaku CCD Mercury衍射仪上用石墨单色Mo Kα辐射在123K下进行X射线衍射测量。通过直接方法(SHELXS 97)6求解结构,并使用傅立叶技术进行扩展。使用SHELXL 20147(YadokariXG),通过全矩阵最小二乘法对结构进行了细化。8不对称单元包含两个非常相似的分子,它们可以在[0 1 1]方向上以平移对称性几乎相互关联。这可以被解释为具有半单位细胞体积的结构。然而,反阴离子(NO3,Br–)和结晶水分子位于不同的位置,不能通过平移对称性联系起来。此外,k+l=奇数的衍射显示出显著的强度(约为k+l=偶数的衍射的1/3)。因此,我们得出结论,该结构应该在不对称单元中有两个独立的分子。所有非氢原子都用各向异性位移参数进行了精细化。通过应用O–H DFIX约束的默认值,对μ-羟基和水分子中的氢原子进行约束,以确保合理的距离(0.84Å)。使用骑行模型包括其他氢原子。晶体数据汇总在表1中。1的X射线晶体学表明,不对称单元包含两半的复合阳离子[Fe2(6Me2-BPP)2(OH)2](分子A和B)、1.9553个硝酸根离子、0.0447个溴化物离子和8个水分子。溴离子的部分含量似乎是由于6Me2BPPH配体的制备路线,该配体是由双(6-甲基-2-吡啶基甲基)胺与3-溴丙酸在三乙胺存在下的反应获得的。5络合物阳离子[Fe2(6Me2BPP)2(OH)2](分子A)的ORTEP图如图所示。2。表2中给出了选定的键距(Å)和角度(°)。仅2019年©日本分析化学学会
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CiteScore
0.60
自引率
50.00%
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17
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