Next generation sequencing and proteomics in plant virology: how is Colombia doing?

IF 0.5 4区生物学 Q4 PLANT SCIENCES

Acta Biologica Colombiana Pub Date : 2019-09-01 DOI:10.15446/ABC.V24N3.79486

J. Madroñero, Zayda Lorena Corredor Rozo, Javier Antonio Escobar Pérez, M. L. Velandia Romero

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引用次数: 4

Abstract

Crop production and trade are two of the most economically important activities in Colombia, and viral diseases cause a high negative impact to agricultural sector. Therefore, the detection, diagnosis, control, and management of viral diseases are crucial. Currently, Next-Generation Sequencing (NGS) and ‘Omic’ technologies constitute a right-hand tool for the discovery of novel viruses and for studying virus-plant interactions. This knowledge allows the development of new viral diagnostic methods and the discovery of key components of infectious processes, which could be used to generate plants resistant to viral infections. Globally, crop sciences are advancing in this direction. In this review, advancements in ‘omic’ technologies and their different applications in plant virology in Colombia are discussed. In addition, bioinformatics pipelines and resources for omics data analyses are presented. Due to their decreasing prices, NGS technologies are becoming an affordable and promising means to explore many phytopathologies affecting a wide variety of Colombian crops so as to improve their trade potential.

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植物病毒学的下一代测序和蛋白质组学:哥伦比亚做得怎么样?

作物生产和贸易是哥伦比亚最重要的两项经济活动，病毒性疾病对农业部门造成了严重的负面影响。因此，病毒性疾病的检测、诊断、控制和管理至关重要。目前，下一代测序（NGS）和“奥密克戎”技术是发现新病毒和研究病毒与植物相互作用的得力工具。这些知识有助于开发新的病毒诊断方法，并发现感染过程的关键组成部分，这些组成部分可用于培育对病毒感染具有耐药性的植物。在全球范围内，作物科学正朝着这个方向发展。本文综述了“omic”技术的进展及其在哥伦比亚植物病毒学中的不同应用。此外，还介绍了用于组学数据分析的生物信息学管道和资源。由于价格不断下降，NGS技术正成为一种负担得起且有前景的手段，可以探索影响多种哥伦比亚作物的许多植物病理学，以提高其贸易潜力。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Acta Biologica Colombiana Agricultural and Biological Sciences-General Agricultural and Biological Sciences

CiteScore

1.60

自引率

0.00%

发文量

审稿时长

13 weeks

期刊介绍： The journal is published quarterly and divulges original and unpublished results of basic and applied research about biological subjects with special interest in Neotropical region. Manuscripts may be research articles, reviews, reflection articles or short notes. The Acta biol. Colomb Journal have a scientific and editorial board composed of expert researchers of in their areas of knowledge.