Investigation of Drought and Salinity Tolerance Related Genes and their Regulatory Mechanisms in Arabidopsis (Arabidopsis thaliana)

Q3 Computer Science

Open Bioinformatics Journal Pub Date : 2018-03-07 DOI:10.2174/1875036201811010012

Nikwan Shariatipour, B. Heidari

引用次数: 16

Abstract

Results: Under drought stress, 2558 gene accessions in root and 3691 in shoot tissues had significantly differential expression with respect to control condition. Likewise, under salinity stress 9078 gene accessions in root and 5785 in shoot tissues were discriminated between stressed and non-stressed conditions. Furthermore, the transcription regulatory activity of differentially expressed genes was mainly due to hormone, light, circadian and stress responsive cis-acting regulatory elements among which ABRE, ERE, P-box, TATC-box, CGTCA-motif, GARE-motif, TGACG-motif, GAG-motif, GA-motif, GATAmotif, TCT-motif, GT1-motif, Box 4, G-Box, I-box, LAMP-element, Sp1, MBS, TC-rich repeats, TCA-element and HSE were the most important elements in the identified up-regulated genes.

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拟南芥耐干旱耐盐碱相关基因及其调控机制的研究

结果：在干旱胁迫下，2558份基因材料在根和3691份基因材料的地上部组织中的表达与对照相比有显著差异。同样，在盐度胁迫下，根中的9078个基因材料和地上部组织中的5785个基因材料在胁迫和非胁迫条件下被区分。此外，差异表达基因的转录调控活性主要是由于激素、光、昼夜节律和应激反应性顺式作用调控元件，其中ABRE、ERE、P-box、TATC-box、CGTCA基序、GARE基序、TGACG基序、GAG基序和GA基序、GATAmotif、TCT基序、GT1基序、Box4、G-box、I-box、LAMP元件、Sp1、MBS、TC富集重复序列，TCA元素和HSE是已鉴定的上调基因中最重要的元素。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Open Bioinformatics Journal Computer Science-Computer Science (miscellaneous)

CiteScore

2.40

自引率

0.00%

发文量

期刊介绍： The Open Bioinformatics Journal is an Open Access online journal, which publishes research articles, reviews/mini-reviews, letters, clinical trial studies and guest edited single topic issues in all areas of bioinformatics and computational biology. The coverage includes biomedicine, focusing on large data acquisition, analysis and curation, computational and statistical methods for the modeling and analysis of biological data, and descriptions of new algorithms and databases. The Open Bioinformatics Journal, a peer reviewed journal, is an important and reliable source of current information on the developments in the field. The emphasis will be on publishing quality articles rapidly and freely available worldwide.