The repeatability and heritability of traits derived from accelerometer sensors associated with grazing and rumination time in an extensive sheep farming system

Abstract

Introduction The automated collection of phenotypic measurements in livestock is of interest to both researchers and farmers. Real-time, low-cost, and accurate phenotyping can enhance precision livestock management and could lead to the optimized utilization of pasture and breeding of efficient animals. Wearable sensors provide the tools for researchers to develop novel phenotypes across all production systems, which is especially valuable for grazing conditions. The objectives of this study were to estimate the repeatability and heritability of traits related to grazing and rumination activities and their correlations with other traits. Methods This study was conducted on a commercial Merino farm in the west of Victoria, Australia, from 4 May 2020 to 29 May 2020. A total of 160 ActiGraph sensors embedded in halters were attached to the left side of the muzzles of Merino sheep (M = 74, F = 86) aged 10–11 months while the sheep were grazing on pasture. Support vector machine (SVM) algorithms classified the sensor output into the categories of grazing, rumination, walking, idle, and other activities. These activities were further classified into daily grazing time (GT), number of grazing events (NGE), grazing length (GL), rumination time (RT), number of rumination events (NRE), rumination length (RL), walking time (WT), and idle time (IT). The data were analyzed using univariate and bivariate models in ASReml-SA to estimate the repeatability, heritability, and phenotypic correlations among traits. Results The heritability of GT was estimated to be 0.44 ± 0.23, whereas the other traits had heritability estimates close to zero. The estimated repeatability for all traits was moderate to high, with the highest estimate being for GT (0.70 ± 0.03) and the lowest for RT (0.44 ± 0.03). The intraclass correlation or repeatability at a 1-day interval (i.e., 2 consecutive days) was high for all traits, and steadily reduced when the interval between measurements was longer than 1 week. Discussion The estimated repeatability for the grazing traits showed that wearable sensors and SVM methods are reliable methods for recording sheep activities on pasture, and have a potential application in the ranking of animals for selective breeding.