{"title":"Do genetically informed distribution models improve range predictions in past climates? A case study with balsam poplar","authors":"A. Gougherty, Stephen R. Keller, M. Fitzpatrick","doi":"10.21425/f5fbg56931","DOIUrl":null,"url":null,"abstract":"Species distribution models (SDMs) are one of the most widely used approaches to predict changes in habitat suitability in response to climate change. However, as typically implemented, SDMs treat species as genetically uniform throughout their ranges and thereby ignore potentially important genetic differences between populations. While numerous studies have used SDMs to model genetically based subgroupings within species, the ability of such models to be transferred to new times has rarely been evaluated. Here, we used standard and genetically informed distribution models (gSDMs) to predict the future and past range of balsam poplar ( Populus balsamifera L.). We then assessed model transferability of standard SDMs and gSDMs using balsam poplar fossil pollen and macrofossil occurrences. In general, standard and gSDMs performed similarly through time, with both predicting a northward expanding range from refugia as glaciers receded over the past 22 ky BP and declining suitable area in future climates. Both standard and gSDMs showed moderate abilities to distinguish balsam poplar fossils from pseudo-absences but tended to predict lower suitability at fossil sites during the Pleistocene-Holocene transition. Although gSDMs applied to balsam poplar did not prove more transferable than standard SDMs, they provided numerous unique insights, such as the change in suitable area of genetic clusters through time and potential refugial locations. We argue more research is needed to determine which species may benefit most from the gSDM approach and to test gSDMs with temporally or spatially independent occurrences, as is often recommended for standard SDMs.","PeriodicalId":37788,"journal":{"name":"Frontiers of Biogeography","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers of Biogeography","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21425/f5fbg56931","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 0
Abstract
Species distribution models (SDMs) are one of the most widely used approaches to predict changes in habitat suitability in response to climate change. However, as typically implemented, SDMs treat species as genetically uniform throughout their ranges and thereby ignore potentially important genetic differences between populations. While numerous studies have used SDMs to model genetically based subgroupings within species, the ability of such models to be transferred to new times has rarely been evaluated. Here, we used standard and genetically informed distribution models (gSDMs) to predict the future and past range of balsam poplar ( Populus balsamifera L.). We then assessed model transferability of standard SDMs and gSDMs using balsam poplar fossil pollen and macrofossil occurrences. In general, standard and gSDMs performed similarly through time, with both predicting a northward expanding range from refugia as glaciers receded over the past 22 ky BP and declining suitable area in future climates. Both standard and gSDMs showed moderate abilities to distinguish balsam poplar fossils from pseudo-absences but tended to predict lower suitability at fossil sites during the Pleistocene-Holocene transition. Although gSDMs applied to balsam poplar did not prove more transferable than standard SDMs, they provided numerous unique insights, such as the change in suitable area of genetic clusters through time and potential refugial locations. We argue more research is needed to determine which species may benefit most from the gSDM approach and to test gSDMs with temporally or spatially independent occurrences, as is often recommended for standard SDMs.
物种分布模型(SDMs)是预测气候变化下生境适宜性变化最常用的方法之一。然而,通常情况下,sdm将物种视为在其范围内的遗传一致性,从而忽略了种群之间潜在的重要遗传差异。虽然许多研究已经使用sdm来模拟物种内基于遗传的亚群,但这种模型转移到新时代的能力很少得到评估。本文采用标准遗传信息分布模型(gSDMs)预测了苦杨(Populus balsamifera L.)未来和过去的分布范围。然后,我们利用苦杨化石花粉和大化石事件评估了标准SDMs和gSDMs的模型可转移性。总的来说,随着时间的推移,标准和gSDMs的表现相似,两者都预测了过去22 ky BP冰川消退时从避难所向北扩大的范围,以及未来气候下适宜区域的减少。标准和gSDMs在区分白杨化石和伪缺失化石方面均表现出中等能力,但在更新世-全新世过渡时期的化石遗址上预测适用性较低。虽然应用于苦杨的gSDMs没有证明比标准SDMs更具可转移性,但它们提供了许多独特的见解,例如遗传集群的适宜区域随时间的变化和潜在的避难地点。我们认为需要更多的研究来确定哪些物种可能从gSDM方法中获益最多,并像通常推荐的标准sdm那样,在时间或空间上独立地测试gSDM。
期刊介绍:
Frontiers of Biogeography is the scientific magazine of the International Biogeography Society (http://www.biogeography.org/). Our scope includes news, original research letters, reviews, opinions and perspectives, news, commentaries, interviews, and articles on how to teach, disseminate and/or apply biogeographical knowledge. We accept papers on the study of the geographical variations of life at all levels of organization, including also studies on temporal and/or evolutionary variations in any component of biodiversity if they have a geographical perspective, as well as studies at relatively small scales if they have a spatially explicit component.