Exploring Transcriptional Relationships Implicated in Autism and Inflammatory Bowel Diseases Using Systems Biology Approaches

Q3 Biochemistry, Genetics and Molecular Biology
F. Izadi, Mohammad Hasan Soheilifar, Hoda Keshmiri Neghab, Mahya Soheilifar, R. Amini
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引用次数: 0

Abstract

Introduction: Understanding the association among various disorders has remarkably improved their diagnosis and therapies. It has been observed that autism and inflammatory bowel diseases cause a sort of inflammation. Exploring the relationship between them will lead to discovering important involved genes and in turn will eventually help discover any possible common therapeutic protocols. The aim of the present study was to determine the correlation between autism spectrum disorders and inflammatory bowel diseases. Materials and Methods: The common genes associated with autism spectrum disorders and inflammatory bowel diseases were retrieved from DisGeNET. SFARI databases and were subjected to an in silico data analysis framework to explore predictive genes and the related pathways. Results: Eleven genes including HLA-DRB1, MTHFR, PON1, IL6, MTOR, SETD2, GSTM1, APC, IFNG, SERPINE1, and MAPK1 regulated by YY1 and IRF1 transcription factors were characterized as discriminating molecules which by further screening were enriched in pathways mostly involved in neutrophil apoptosis, neutrophil homeostasis, chemokine biosynthesis and the regulation of immune system response. Conclusions: According to findings it can be stated that the identified common genes were associated with a wide range of pathogenic mechanisms.
利用系统生物学方法探索自闭症和炎症性肠病的转录关系
前言:了解各种疾病之间的联系可以显著提高其诊断和治疗。据观察,自闭症和炎症性肠病会引起一种炎症。探索它们之间的关系将导致发现重要的相关基因,反过来将最终有助于发现任何可能的共同治疗方案。本研究的目的是确定自闭症谱系障碍和炎症性肠病之间的相关性。材料与方法:从DisGeNET检索与自闭症谱系障碍和炎症性肠病相关的常见基因。SFARI数据库和计算机数据分析框架,以探索预测基因和相关途径。结果:YY1和IRF1转录因子调控的HLA-DRB1、MTHFR、PON1、IL6、MTOR、SETD2、GSTM1、APC、IFNG、SERPINE1、MAPK1等11个基因被鉴定为鉴别分子,经进一步筛选,这些基因主要富集于中性粒细胞凋亡、中性粒细胞稳态、趋化因子生物合成和免疫系统反应调控等通路中。结论:根据研究结果,可以认为鉴定的共同基因与广泛的致病机制有关。
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来源期刊
Journal of Applied Biotechnology Reports
Journal of Applied Biotechnology Reports Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
1.90
自引率
0.00%
发文量
0
期刊介绍: The Journal of Applied Biotechnology Reports (JABR) publishes papers describing experimental work relating to all fundamental issues of biotechnology including: Cell Biology, Genetics, Microbiology, Immunology, Molecular Biology, Biochemistry, Embryology, Immunogenetics, Cell and Tissue Culture, Molecular Ecology, Genetic Engineering and Biological Engineering, Bioremediation and Biodegradation, Bioinformatics, Biotechnology Regulations, Pharmacogenomics, Gene Therapy, Plant, Animal, Microbial and Environmental Biotechnology, Nanobiotechnology, Medical Biotechnology, Biosafety, Biosecurity, Bioenergy, Biomass, Biomaterials and Biobased Chemicals and Enzymes. Journal of Applied Biotechnology Reports promotes a special emphasis on: -Improvement methods in biotechnology -Optimization process for high production in fermentor systems -Protein and enzyme engineering -Antibody engineering and monoclonal antibody -Molecular farming -Bioremediation -Immobilizing methods -biocatalysis
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