Ovalbumin’s potential as a wound-healing medicament in tooth extraction socket by induction of cell proliferation through the ERK2 pathway in silico

Sri Nabawiyati Nurul Makiyah, Sartika Puspita
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Abstract

Background: The trend of studies on dental medicaments is increasing rapidly. Antibacterial or anti-inflammatory activity is most frequently studied. Ovalbumin is one of the proteins whose benefits have been studied, but these benefits are still limited because of ovalbumin’s potential for proliferative bioactivity. Purpose: The aim of this study is to examine ovalbumin’s potential as a woundhealing medicament through molecular docking analysis on a protein related to the extracellular signal-regulated kinases/mitogenactivated protein kinase (ERK/MAPK) signaling pathway. Methods: Ovalbumin was hydrolyzed through BIOPEP-UWM (The BIOPEPUWM™ database of bioactive peptides). Protein target and interaction were predicted using Similarity Ensemble Approach target prediction webserver, SuperPred webserver, STRING webserver, and Cytoscape version 3.9.1. Selected fragments were docked using Autodock Vina in PyRx 0.8 with Tukey’s multiple comparison test and Biovia Discovery Studio version 19.1.0.18287 for visualization. Results: This study found that ovalbumin has the potential to positively regulate cell proliferation, angiogenesis, and fibroblast growth factor production. Six of the 131 fragments of ovalbumin could interact with 73 proteins, and the 20 proteins with the highest probability and score of betweenness centrality showed potential for bioactivity. Five fragments and povidone-iodine interacted inside the Adenosine triphosphate (ATP) phosphorylation site of ERK2, whereas fragment 1 (F1) and glycerin interacted outside the site. F1 could decrease the binding energy required for adenosine 5′-[,-methylene]triphosphate or an ATP-analogue chemical compound to interact with ERK2 compared to the control, with a score that was not significant. Conclusion: Ovalbumin has the potential to induce cell proliferation by affecting ERK2-ligand interactions.
通过ERK2途径诱导细胞增殖,卵清蛋白作为拔牙窝伤口愈合药物的潜力
背景:口腔药物的研究呈快速增长趋势。抗菌或抗炎活性是最常被研究的。卵清蛋白是一种其益处已被研究的蛋白质,但由于卵清蛋白具有潜在的增殖生物活性,这些益处仍然有限。目的:本研究的目的是通过对细胞外信号调节激酶/丝裂原活化蛋白激酶(ERK/MAPK)信号通路相关蛋白的分子对接分析,研究卵清蛋白作为伤口愈合药物的潜力。方法:通过BIOPEP-UWM (BIOPEPUWM™生物活性肽数据库)水解卵白蛋白。使用Similarity Ensemble Approach target prediction webserver、SuperPred webserver、STRING webserver和Cytoscape version 3.9.1对蛋白靶点和相互作用进行预测。选择的片段使用Autodock Vina在PyRx 0.8中与Tukey的多重比较测试和Biovia Discovery Studio版本19.1.0.18287进行可视化对接。结果:本研究发现卵清蛋白具有正向调节细胞增殖、血管生成和成纤维细胞生长因子产生的潜力。在131个卵白蛋白片段中,有6个片段可与73个蛋白相互作用,其中概率和中心性得分最高的20个蛋白显示出潜在的生物活性。五个片段和聚维酮碘在ERK2的三磷酸腺苷(ATP)磷酸化位点内相互作用,而片段1 (F1)和甘油在该位点外相互作用。与对照组相比,F1可以降低腺苷5 ' -[,-亚甲基]三磷酸或atp类似化合物与ERK2相互作用所需的结合能,但得分不显著。结论:卵清蛋白可能通过影响erk2与配体的相互作用来诱导细胞增殖。
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